RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CTU1Q7Z7A3 348 aaKnown RBP10.45□□□□□ -0.74
VPS39-207ENST00000563692 TBC1D10CQ8IV04 446 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 ZNF384Q8TF68 577 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 ESR2Q92731 530 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 OPTNQ96CV9 577 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 WRNIP1Q96S55 665 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 ELP3Q9H9T3 547 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 ARPP21Q9UBL0 812 aaPredicted RBP10.45□□□□□ -0.74
VPS39-207ENST00000563692 ZDHHC9Q9Y397 364 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 MROH7-TTC4A0A0A0MT08 1334 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 GPR75-ASB3A0A0A6YYF3 556 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 KLF18A0A0U1RQI7 1052 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 CCDC69A6NI79 296 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 B4E1Z4 1266 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 IFIT3O14879 490 aaKnown RBP10.44□□□□□ -0.74
VPS39-207ENST00000563692 KDM4AO75164 1064 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 WDHD1O75717 1129 aaPredicted RBP10.44□□□□□ -0.74
VPS39-207ENST00000563692 LIFRP42702 1097 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 GTF2A2P52657 109 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 PDE4BQ07343 736 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 SCRN1Q12765 414 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 PKP1Q13835 747 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 VGLL4Q14135 290 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 PKN2Q16513 984 aaKnown RBP10.44□□□□□ -0.74
VPS39-207ENST00000563692 NOM1Q5C9Z4 860 aaKnown RBP10.44□□□□□ -0.74
VPS39-207ENST00000563692 TMEM67Q5HYA8 995 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 RRP12Q5JTH9 1297 aaKnown RBP10.44□□□□□ -0.74
VPS39-207ENST00000563692 CDC42EP5Q6NZY7 148 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 CTR9Q6PD62 1173 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 NFXL1Q6ZNB6 911 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 IFNL1Q8IU54 200 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 CDAN1Q8IWY9 1227 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS39-207ENST00000563692 FAM151AQ8WW52 585 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 ZNF341Q9BYN7 854 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 NBPF3Q9H094 633 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 ZNF287Q9HBT7 754 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 ZSWIM5Q9P217 1185 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 ECM29Q5VYK3 1845 aa10.44□□□□□ -0.74
VPS39-207ENST00000563692 USP17L12C9JPN9 530 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 USP17L21D6R901 530 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 H3BQV1 296 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 GPR25O00155 361 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 SH2B2O14492 632 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 CPLX1O14810 134 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 TRAK2O60296 914 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 FKTNO75072 461 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 CDKL5O76039 1030 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 NCLP19338 710 aaKnown RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 ANTXR2P58335 489 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 CCT2P78371 535 aaKnown RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 COL9A3Q14050 684 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 WTAPQ15007 396 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 CSPP1Q1MSJ5 1256 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 MCTP1Q6DN14 999 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 CYB5R4Q7L1T6 521 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 ZSCAN29Q8IWY8 852 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 SMARCC2Q8TAQ2 1214 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 IGDCC4Q8TDY8 1250 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 ZNF296Q8WUU4 475 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 OTUD5Q96G74 571 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 UBAC1Q9BSL1 405 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 DCP1AQ9NPI6 582 aaPredicted RBP10.43□□□□□ -0.74
VPS39-207ENST00000563692 MCM9Q9NXL9 1143 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 SLC12A7Q9Y666 1083 aa10.43□□□□□ -0.74
VPS39-207ENST00000563692 GAKO14976 1311 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 GOLGA8BA8MQT2 603 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 F13A1P00488 732 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 POLR3DP05423 398 aaPredicted RBP10.42□□□□□ -0.74
VPS39-207ENST00000563692 FGRP09769 529 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 BTDP43251 543 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 ST3GAL1Q11201 340 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 PPP2R5BQ15173 497 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 CCDC178Q5BJE1 867 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 FOXD4L5Q5VV16 416 aaPredicted RBP10.42□□□□□ -0.74
VPS39-207ENST00000563692 MIGA2Q7L4E1 593 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 SGMS1Q86VZ5 419 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 IQCA1Q86XH1 822 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 ERO1BQ86YB8 467 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 SH3RF3Q8TEJ3 882 aaPredicted RBP10.42□□□□□ -0.74
VPS39-207ENST00000563692 FOXD4L4Q8WXT5 416 aaPredicted RBP10.42□□□□□ -0.74
VPS39-207ENST00000563692 CFHR5Q9BXR6 569 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 CASP8AP2Q9UKL3 1982 aa10.42□□□□□ -0.74
VPS39-207ENST00000563692 NEDD4P46934 1319 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 CCL15-CCL14A0A0B4J2E2 113 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 CCDC196A0A1B0GTZ2 297 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 VPS37CA5D8V6 355 aaPredicted RBP10.41□□□□□ -0.74
VPS39-207ENST00000563692 SPDYE5A6NIY4 337 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 ZBTB43O43298 467 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 ORC4O43929 436 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 RANBP6O60518 1105 aaKnown RBP10.41□□□□□ -0.74
VPS39-207ENST00000563692 ENTPD3O75355 529 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 CETPP11597 493 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 GJA5P36382 358 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 METAP2P50579 478 aaKnown RBP eCLIP10.41□□□□□ -0.74
VPS39-207ENST00000563692 NFIAQ12857 509 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 SNAPC2Q13487 334 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 CCL15Q16663 113 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 TEX11Q8IYF3 940 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms