RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PCDHB14Q9Y5E9 798 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 SNX11Q9Y5W9 270 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 GRIN3BO60391 1043 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 MED26O95402 600 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 HOXA10P31260 410 aaPredicted RBP5.49□□□□□ -1.53
VPS35-203ENST00000562420 CLCN7P51798 805 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 PAK2Q13177 524 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 IFI16Q16666 785 aaKnown RBP5.49□□□□□ -1.53
VPS35-203ENST00000562420 TAB3Q8N5C8 712 aaPredicted RBP5.49□□□□□ -1.53
VPS35-203ENST00000562420 RBBP8NLQ8NC74 664 aaPredicted RBP5.49□□□□□ -1.53
VPS35-203ENST00000562420 CCSER2Q9H7U1 834 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 ZC3H7BQ9UGR2 993 aaKnown RBP5.49□□□□□ -1.53
VPS35-203ENST00000562420 CEP131Q9UPN4 1083 aa5.49□□□□□ -1.53
VPS35-203ENST00000562420 TMEM265A0A087WTH1 108 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 SLC22A31A6NKX4 558 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 TNFRSF10CO14798 259 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 RGS13O14921 159 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 DNAJA2O60884 412 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 IRAK1P51617 712 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 SFRP5Q5T4F7 317 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 PIWIL2Q8TC59 973 aaKnown RBP5.48□□□□□ -1.53
VPS35-203ENST00000562420 PPP1R13LQ8WUF5 828 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 TMEM40Q8WWA1 233 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 SEC16BQ96JE7 1060 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 CCDC74BQ96LY2 380 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 CNNM2Q9H8M5 875 aa5.48□□□□□ -1.53
VPS35-203ENST00000562420 GNAT3A8MTJ3 354 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 ERCC5P28715 1186 aaPredicted RBP5.47□□□□□ -1.53
VPS35-203ENST00000562420 TXKP42681 527 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 CLCQ05315 142 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 INTS3Q68E01 1043 aaKnown RBP5.47□□□□□ -1.53
VPS35-203ENST00000562420 OVOS1Q6IE37 1185 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 SPACA3Q8IXA5 215 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 MFSD4AQ8N468 514 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 RNF141Q8WVD5 230 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 DPH2Q9BQC3 489 aaPredicted RBP5.47□□□□□ -1.53
VPS35-203ENST00000562420 ASPNQ9BXN1 380 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 LRRC4CQ9HCJ2 640 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 VAV3Q9UKW4 847 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 STRIP2Q9ULQ0 834 aa5.47□□□□□ -1.53
VPS35-203ENST00000562420 TPX2Q9ULW0 747 aaKnown RBP5.47□□□□□ -1.53
VPS35-203ENST00000562420 OAS3Q9Y6K5 1087 aaKnown RBP5.47□□□□□ -1.53
VPS35-203ENST00000562420 CHURC1-FNTBB4DL54 471 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 TAL1P17542 331 aaPredicted RBP5.46□□□□□ -1.54
VPS35-203ENST00000562420 MCM4P33991 863 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 PRKCQQ04759 706 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 C9orf131Q5VYM1 1079 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 GK5Q6ZS86 529 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 ARHGAP27Q6ZUM4 889 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 NLRC3Q7RTR2 1065 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 THAP5Q7Z6K1 395 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 OR6P1Q8NGX9 317 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 FBXL18Q96ME1 805 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 TM9SF2Q99805 663 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS35-203ENST00000562420 CCDC39Q9UFE4 941 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 KLHL3Q9UH77 587 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 CAPN6Q9Y6Q1 641 aa5.46□□□□□ -1.54
VPS35-203ENST00000562420 UPK3BL1B0FP48 263 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 UPK3BL2E5RIL1 263 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 WNT11O96014 354 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 NME1P15531 152 aaKnown RBP5.45□□□□□ -1.54
VPS35-203ENST00000562420 RAG1P15918 1043 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 NKPD1Q17RQ9 610 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 PLD6Q8N2A8 252 aaKnown RBP5.45□□□□□ -1.54
VPS35-203ENST00000562420 FAM181AQ8N9Y4 354 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 RIN3Q8TB24 985 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 ATG4CQ96DT6 458 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 HRASLS5Q96KN8 279 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 FMNL2Q96PY5 1086 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 FERD3LQ96RJ6 166 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 ACBD3Q9H3P7 528 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 ANGEL1Q9UNK9 670 aaKnown RBP5.45□□□□□ -1.54
VPS35-203ENST00000562420 PLAGL2Q9UPG8 496 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 INPP5FQ9Y2H2 1132 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 U3KQE9 123 aa5.45□□□□□ -1.54
VPS35-203ENST00000562420 GP2P55259 537 aaKnown RBP5.44□□□□□ -1.54
VPS35-203ENST00000562420 RNF4P78317 190 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 GNL2Q13823 731 aaKnown RBP5.44□□□□□ -1.54
VPS35-203ENST00000562420 ARSHQ5FYA8 562 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 CDH24Q86UP0 819 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 PHACTR4Q8IZ21 702 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 C19orf47Q8N9M1 422 aaKnown RBP5.44□□□□□ -1.54
VPS35-203ENST00000562420 AGBL5Q8NDL9 886 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 XAGE3Q8WTP9 111 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 BCL7CQ8WUZ0 217 aaPredicted RBP5.44□□□□□ -1.54
VPS35-203ENST00000562420 ASB11Q8WXH4 323 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 VWCEQ96DN2 955 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 KRTAP4-9Q9BYQ8 210 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 GINM1Q9NU53 330 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 SLC5A6Q9Y289 635 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 PITPNM2Q9BZ72 1349 aa5.44□□□□□ -1.54
VPS35-203ENST00000562420 ADAMTS4O75173 837 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 UBOX5O94941 541 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 NFXL1Q6ZNB6 911 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 WFDC3Q8IUB2 231 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 SLC43A3Q8NBI5 491 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 KREMEN1Q96MU8 473 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 TINF2Q9BSI4 451 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 KCNH3Q9ULD8 1083 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms