RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FERMT2Q96AC1 680 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 NAP1L4Q99733 375 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 SPZ1Q9BXG8 430 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 IDI2Q9BXS1 227 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 CLSTN2Q9H4D0 955 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 FAM13BQ9NYF5 915 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 TMEM63CQ9P1W3 806 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 SEC63Q9UGP8 760 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 SERPINB13Q9UIV8 391 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 TTF2Q9UNY4 1162 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 MYH15Q9Y2K3 1946 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 TAF1P21675 1872 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 SYCE3A1L190 88 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 PITPNM1O00562 1244 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 CUTAO60888 179 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 ENTPD3O75355 529 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 CMA1P23946 247 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 GNA11P29992 359 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 ADD1P35611 737 aaKnown RBP8.65□□□□□ -1.02
VPS39-204ENST00000561818 NOVP48745 357 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 TFAP4Q01664 338 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 GRM4Q14833 912 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 CT47A1Q5JQC4 288 aaPredicted RBP8.65□□□□□ -1.02
VPS39-204ENST00000561818 FOXP4Q8IVH2 680 aaPredicted RBP8.65□□□□□ -1.02
VPS39-204ENST00000561818 CCDC24Q8N4L8 307 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 PNMA1Q8ND90 353 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 SH3RF3Q8TEJ3 882 aaPredicted RBP8.65□□□□□ -1.02
VPS39-204ENST00000561818 TGFBRAP1Q8WUH2 860 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 GINM1Q9NU53 330 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 ANO10Q9NW15 660 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 PI4KBQ9UBF8 816 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 DAGLAQ9Y4D2 1042 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 FOCADQ5VW36 1801 aa8.65□□□□□ -1.02
VPS39-204ENST00000561818 COL11A2P13942 1736 aaPredicted RBP8.65□□□□□ -1.03
VPS39-204ENST00000561818 SNED1Q8TER0 1413 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 FAM237AA0A1B0GTK4 181 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 TTLL1O95922 423 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 SCG2P13521 617 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 CDC27P30260 824 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 TXLNAP40222 546 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 RHBDL3P58872 404 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 STX1AQ16623 288 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 PFKFB3Q16875 520 aaPredicted RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 SMIM5Q71RC9 77 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 NBPF11Q86T75 865 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 DIS3L2Q8IYB7 885 aaKnown RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 KRI1Q8N9T8 703 aaKnown RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 DAGLBQ8NCG7 672 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 FAM200AQ8TCP9 573 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 HOOK2Q96ED9 719 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 PPP1R9BQ96SB3 815 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 OSBPL5Q9H0X9 879 aaPredicted RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 FAM217BQ9NTX9 383 aaPredicted RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 DACT1Q9NYF0 836 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 DACH1Q9UI36 760 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 HERC5Q9UII4 1024 aaKnown RBP8.64□□□□□ -1.03
VPS39-204ENST00000561818 PNMA2Q9UL42 364 aa8.64□□□□□ -1.03
VPS39-204ENST00000561818 ATRNL1Q5VV63 1379 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 A0A0G2JLW4 131 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 ESYT2A0FGR8 921 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 TRIM75PA6NK02 468 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 ECE2O60344 883 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 PARP1P09874 1014 aaKnown RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 XRCC6P12956 609 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS39-204ENST00000561818 PRKCSHP14314 528 aaPredicted RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 RPS12P25398 132 aaKnown RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 CRKP46108 304 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 CDK8P49336 464 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 DIXDC1Q155Q3 683 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 EZH2Q15910 746 aaKnown RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 ARL6IP4Q66PJ3 421 aaKnown RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 POTEAQ6S8J7 498 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 CEP57L1Q8IYX8 460 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 AGBL3Q8NEM8 1001 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 C7orf43Q8WVR3 580 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 RRP36Q96EU6 259 aaKnown RBP8.63□□□□□ -1.03
VPS39-204ENST00000561818 USP28Q96RU2 1077 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 PHF20Q9BVI0 1012 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS39-204ENST00000561818 MTFR1LQ9H019 292 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 SH2D4AQ9H788 454 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 GDPD2Q9HCC8 539 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 KIF13BQ9NQT8 1826 aa8.63□□□□□ -1.03
VPS39-204ENST00000561818 BAZ2AQ9UIF9 1905 aaKnown RBP8.62□□□□□ -1.03
VPS39-204ENST00000561818 CNTNAP5Q8WYK1 1306 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 LTBP3Q9NS15 1303 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 GOLGA6L19H0YKK7 550 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 PPIP5K2O43314 1243 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 MYL1P05976 194 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 USP17L8P0C7I0 530 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 RASA1P20936 1047 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 TNNI2P48788 182 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 NLRP5P59047 1200 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 EN1Q05925 392 aaPredicted RBP8.62□□□□□ -1.03
VPS39-204ENST00000561818 GABPAQ06546 454 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 TNFAIP1Q13829 316 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 TNIP1Q15025 636 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 FOXD4L6Q3SYB3 417 aaPredicted RBP8.62□□□□□ -1.03
VPS39-204ENST00000561818 DACT2Q5SW24 774 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 FOXD4L3Q6VB84 417 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms