RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 NBPF11Q86T75 865 aa18.8■□□□□ 0.6
VPS39-203ENST00000561797 RAET1EQ8TD07 263 aa18.8■□□□□ 0.6
VPS39-203ENST00000561797 P2RX7Q99572 595 aaKnown RBP18.8■□□□□ 0.6
VPS39-203ENST00000561797 LNPKQ9C0E8 428 aa18.8■□□□□ 0.6
VPS39-203ENST00000561797 GSG1L2A8MUP6 293 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 GPAA1O43292 621 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 HOXA7P31268 230 aaPredicted RBP18.79■□□□□ 0.6
VPS39-203ENST00000561797 CDK8P49336 464 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 PDE1AP54750 535 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 PRKCZQ05513 592 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 FAM110CQ1W6H9 321 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 SEC62Q99442 399 aaKnown RBP18.79■□□□□ 0.6
VPS39-203ENST00000561797 GABRQQ9UN88 632 aa18.79■□□□□ 0.6
VPS39-203ENST00000561797 MYH4Q9Y623 1939 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 TNPO2O14787 897 aaKnown RBP18.78■□□□□ 0.6
VPS39-203ENST00000561797 AKR1B1P15121 316 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 USP14P54578 494 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 IRX6P78412 446 aaPredicted RBP18.78■□□□□ 0.6
VPS39-203ENST00000561797 STK11IPQ8N1F8 1099 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 ZNF333Q96JL9 665 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 KIAA1683Q9H0B3 1180 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 ARPP21Q9UBL0 812 aaPredicted RBP18.78■□□□□ 0.6
VPS39-203ENST00000561797 STAP2Q9UGK3 403 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 PLXNB2O15031 1838 aa18.78■□□□□ 0.6
VPS39-203ENST00000561797 POTEFA5A3E0 1075 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 MINDY4BA8MYZ0 360 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 PEX10O60683 326 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 APPP05067 770 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 HERVK_113P62684 666 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 TMEM179Q6ZVK1 233 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 C16orf86Q6ZW13 317 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 SMC5Q8IY18 1101 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 TMEM106CQ9BVX2 250 aa18.77■□□□□ 0.6
VPS39-203ENST00000561797 KIAA0100Q14667 2235 aaKnown RBP18.77■□□□□ 0.59
VPS39-203ENST00000561797 GNAT2P19087 354 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 CLEC10AQ8IUN9 316 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 C12orf42Q96LP6 360 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 CCDC17Q96LX7 622 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 TAOK2Q9UL54 1235 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 PARP14Q460N5 1801 aa18.76■□□□□ 0.59
VPS39-203ENST00000561797 GREB1LQ9C091 1923 aaPredicted RBP18.76■□□□□ 0.59
VPS39-203ENST00000561797 A0A1W2PRG0 241 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L15C9J2P7 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L13C9JLJ4 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L11C9JVI0 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L18D6R9N7 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L22D6RA61 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L17D6RBQ6 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L19D6RCP7 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L20D6RJB6 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 GRK4P32298 578 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 TDO2P48775 406 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 FLT3LGP49771 235 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 USP17L24Q0WX57 530 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 SBK1Q52WX2 424 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 ZMYM1Q5SVZ6 1142 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 GIMAP6Q6P9H5 292 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 COA7Q96BR5 231 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 EVI5LQ96CN4 794 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 PAGR1Q9BTK6 254 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 EPB41L4AQ9HCS5 686 aaPredicted RBP18.75■□□□□ 0.59
VPS39-203ENST00000561797 TXNRD2Q9NNW7 524 aa18.75■□□□□ 0.59
VPS39-203ENST00000561797 BIN2Q9UBW5 565 aaPredicted RBP18.75■□□□□ 0.59
VPS39-203ENST00000561797 RLFQ13129 1914 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 PATL2C9JE40 543 aaKnown RBP18.74■□□□□ 0.59
VPS39-203ENST00000561797 VCAM1P19320 739 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 CATSPERGQ6ZRH7 1159 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 CHD1LQ86WJ1 897 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 RBPJLQ9UBG7 517 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 MORF4L1Q9UBU8 362 aa18.74■□□□□ 0.59
VPS39-203ENST00000561797 COL11A1P12107 1806 aaPredicted RBP18.74■□□□□ 0.59
VPS39-203ENST00000561797 ADCY3O60266 1144 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 EN2P19622 333 aaPredicted RBP18.73■□□□□ 0.59
VPS39-203ENST00000561797 ICA1Q05084 483 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 CCDC129Q6ZRS4 1044 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 IFNL3Q8IZI9 196 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 GPRC5AQ8NFJ5 357 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 RPAP3Q9H6T3 665 aaPredicted RBP18.73■□□□□ 0.59
VPS39-203ENST00000561797 MKNK2Q9HBH9 465 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 ARHGEF10LQ9HCE6 1279 aa18.73■□□□□ 0.59
VPS39-203ENST00000561797 TRIM6-TRIM34B2RNG4 842 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 ELNP15502 786 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 ATP2B2Q01814 1243 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 NUCB1Q02818 461 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 MTFR1Q15390 333 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 Q3C1V9 767 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 POTEEQ6S8J3 1075 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 SIAH1Q8IUQ4 282 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 NACAP1Q9BZK3 213 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 HTTP42858 3142 aa18.72■□□□□ 0.59
VPS39-203ENST00000561797 RASA1P20936 1047 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 ERVK-9P63128 1117 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 ERVK-24P63145 666 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 KIAA1755Q5JYT7 1200 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 SLAIN1Q8ND83 568 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 GTF3C2Q8WUA4 911 aaPredicted RBP18.71■□□□□ 0.59
VPS39-203ENST00000561797 RILPL2Q969X0 211 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 TANGO6Q9C0B7 1094 aa18.71■□□□□ 0.59
VPS39-203ENST00000561797 ROBO3Q96MS0 1386 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 EEF2P13639 858 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms