RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CACNB2Q08289 660 aaPredicted RBP23.09■■□□□ 1.29
VPS35-202ENST00000561713 SOCS4Q8WXH5 440 aa23.09■■□□□ 1.29
VPS35-202ENST00000561713 EDC3Q96F86 508 aaKnown RBP23.09■■□□□ 1.29
VPS35-202ENST00000561713 PORCNQ9H237 461 aa23.09■■□□□ 1.29
VPS35-202ENST00000561713 MAPK4P31152 587 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 ERVK-9P63128 1117 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 ERVK-24P63145 666 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 MAP3K12Q12852 859 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 PDE3AQ14432 1141 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 CCL14Q16627 93 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 HSP90AB4PQ58FF6 505 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 DEFB123Q8N688 67 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 USP6NLQ92738 828 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 PAGR1Q9BTK6 254 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 EMILIN3Q9NT22 766 aa23.08■■□□□ 1.29
VPS35-202ENST00000561713 UNC80Q8N2C7 3258 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 GOLIM4O00461 696 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 ZKSCAN1P17029 563 aaPredicted RBP23.07■■□□□ 1.28
VPS35-202ENST00000561713 EVX2Q03828 476 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 Q7L0L9 218 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 GPR142Q7Z601 462 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 KIF1BPQ96EK5 621 aa23.07■■□□□ 1.28
VPS35-202ENST00000561713 HMMRO75330 724 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 PDE6AP16499 860 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 CCND3P30281 292 aaPredicted RBP23.06■■□□□ 1.28
VPS35-202ENST00000561713 LRIT3Q3SXY7 679 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 MORN1Q5T089 497 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 LHX8Q68G74 356 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 GPR153Q6NV75 609 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 CCAR1Q8IX12 1150 aaKnown RBP23.06■■□□□ 1.28
VPS35-202ENST00000561713 TRMT44Q8IYL2 757 aaKnown RBP23.06■■□□□ 1.28
VPS35-202ENST00000561713 TDHQ8IZJ6 230 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 CLASRPQ8N2M8 674 aaKnown RBP23.06■■□□□ 1.28
VPS35-202ENST00000561713 RIOK1Q9BRS2 568 aaKnown RBP23.06■■□□□ 1.28
VPS35-202ENST00000561713 GINM1Q9NU53 330 aa23.06■■□□□ 1.28
VPS35-202ENST00000561713 GH2P01242 217 aa23.05■■□□□ 1.28
VPS35-202ENST00000561713 IFIT2P09913 472 aaKnown RBP23.05■■□□□ 1.28
VPS35-202ENST00000561713 COL6A1P12109 1028 aa23.05■■□□□ 1.28
VPS35-202ENST00000561713 RGS2P41220 211 aa23.05■■□□□ 1.28
VPS35-202ENST00000561713 PLEKHH3Q7Z736 793 aa23.05■■□□□ 1.28
VPS35-202ENST00000561713 RPAP2Q8IXW5 612 aaPredicted RBP23.05■■□□□ 1.28
VPS35-202ENST00000561713 UBE2OQ9C0C9 1292 aaKnown RBP23.05■■□□□ 1.28
VPS35-202ENST00000561713 ZYXQ15942 572 aaKnown RBP23.04■■□□□ 1.28
VPS35-202ENST00000561713 SLFNL1Q499Z3 407 aa23.04■■□□□ 1.28
VPS35-202ENST00000561713 USP17L2Q6R6M4 530 aa23.04■■□□□ 1.28
VPS35-202ENST00000561713 MAGEB6P1A0A0J9YX57 407 aa23.03■■□□□ 1.28
VPS35-202ENST00000561713 LRRC26Q2I0M4 334 aa23.03■■□□□ 1.28
VPS35-202ENST00000561713 SLC9C2Q5TAH2 1124 aa23.03■■□□□ 1.28
VPS35-202ENST00000561713 GTF3C2Q8WUA4 911 aaPredicted RBP23.03■■□□□ 1.28
VPS35-202ENST00000561713 APBA2Q99767 749 aa23.03■■□□□ 1.28
VPS35-202ENST00000561713 ZNF532Q9HCE3 1301 aa23.03■■□□□ 1.28
VPS35-202ENST00000561713 IGSF3O75054 1194 aa23.02■■□□□ 1.28
VPS35-202ENST00000561713 CNMDO75829 334 aa23.02■■□□□ 1.28
VPS35-202ENST00000561713 CHGBP05060 677 aa23.02■■□□□ 1.28
VPS35-202ENST00000561713 LCORLQ8N3X6 602 aa23.02■■□□□ 1.28
VPS35-202ENST00000561713 SERPINB13Q9UIV8 391 aa23.02■■□□□ 1.28
VPS35-202ENST00000561713 PLCD1P51178 756 aa23.01■■□□□ 1.27
VPS35-202ENST00000561713 TTF1Q15361 905 aaPredicted RBP23.01■■□□□ 1.27
VPS35-202ENST00000561713 SDR42E1Q8WUS8 393 aa23.01■■□□□ 1.27
VPS35-202ENST00000561713 FEZ1Q99689 392 aa23.01■■□□□ 1.27
VPS35-202ENST00000561713 BOLA2Q9H3K6 86 aa23.01■■□□□ 1.27
VPS35-202ENST00000561713 CWC22Q9HCG8 908 aaKnown RBP23.01■■□□□ 1.27
VPS35-202ENST00000561713 SMARCA5O60264 1052 aaPredicted RBP23■■□□□ 1.27
VPS35-202ENST00000561713 MAP2K5Q13163 448 aa23■■□□□ 1.27
VPS35-202ENST00000561713 RAB3GAP1Q15042 981 aa23■■□□□ 1.27
VPS35-202ENST00000561713 TATDN1Q6P1N9 297 aa23■■□□□ 1.27
VPS35-202ENST00000561713 CERS3Q8IU89 383 aa23■■□□□ 1.27
VPS35-202ENST00000561713 EHD4Q9H223 541 aa23■■□□□ 1.27
VPS35-202ENST00000561713 MTMR10Q9NXD2 777 aa23■■□□□ 1.27
VPS35-202ENST00000561713 FLRT1Q9NZU1 646 aa23■■□□□ 1.27
VPS35-202ENST00000561713 RABGAP1Q9Y3P9 1069 aa23■■□□□ 1.27
VPS35-202ENST00000561713 TCRBV5S4A2TA0A5A2 114 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L15C9J2P7 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L13C9JLJ4 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L11C9JVI0 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L18D6R9N7 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L22D6RA61 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L17D6RBQ6 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L19D6RCP7 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L20D6RJB6 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 CYP2D6P10635 497 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 SHMT1P34896 483 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 MDM2Q00987 491 aaPredicted RBP22.99■■□□□ 1.27
VPS35-202ENST00000561713 USP17L24Q0WX57 530 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.99■■□□□ 1.27
VPS35-202ENST00000561713 C12orf42Q96LP6 360 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 ARMT1Q9H993 441 aa22.99■■□□□ 1.27
VPS35-202ENST00000561713 FRMPD3Q5JV73 1810 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 CUL9Q8IWT3 2517 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 RAB11FIP3O75154 756 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 WDR78Q5VTH9 848 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 CRNKL1Q9BZJ0 848 aaKnown RBP22.98■■□□□ 1.27
VPS35-202ENST00000561713 PAG1Q9NWQ8 432 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 STXBP5LQ9Y2K9 1186 aa22.98■■□□□ 1.27
VPS35-202ENST00000561713 PARP14Q460N5 1801 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 POLR3DP05423 398 aaPredicted RBP22.97■■□□□ 1.27
VPS35-202ENST00000561713 CCNA1P78396 465 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 ABCB5Q2M3G0 1257 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 CERKLQ49MI3 558 aaPredicted RBP22.97■■□□□ 1.27
VPS35-202ENST00000561713 CATSPERGQ6ZRH7 1159 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms