RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 MAST2Q6P0Q8 1798 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 H0YGN5 161 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 EVI5O60447 810 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 MBD4O95243 580 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 XRCC5P13010 732 aaKnown RBP15.14■□□□□ 0.01
SNX1-209ENST00000559961 ZKSCAN1P17029 563 aaPredicted RBP15.14■□□□□ 0.01
SNX1-209ENST00000559961 JAG1P78504 1218 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 NECAB2Q7Z6G3 386 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 SIRT2Q8IXJ6 389 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 SHISA4Q96DD7 197 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 C12orf42Q96LP6 360 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.14■□□□□ 0.01
SNX1-209ENST00000559961 ARMT1Q9H993 441 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 ARHGEF10LQ9HCE6 1279 aa15.14■□□□□ 0.01
SNX1-209ENST00000559961 DCP1AQ9NPI6 582 aaPredicted RBP15.14■□□□□ 0.01
SNX1-209ENST00000559961 SHMT1P34896 483 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 ADD2P35612 726 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 UBE3CQ15386 1083 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 CATSPERGQ6ZRH7 1159 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 TMEM179Q6ZVK1 233 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 LCORLQ8N3X6 602 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 ANKLE1Q8NAG6 615 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 SDR42E1Q8WUS8 393 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 CCDC17Q96LX7 622 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 PAK6Q9NQU5 681 aaPredicted RBP15.13■□□□□ 0.01
SNX1-209ENST00000559961 ECHDC1Q9NTX5 307 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 RBPJLQ9UBG7 517 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 GJD2Q9UKL4 321 aa15.13■□□□□ 0.01
SNX1-209ENST00000559961 SEPT2Q15019 361 aa15.12■□□□□ 0.01
SNX1-209ENST00000559961 SHROOM1Q2M3G4 852 aaPredicted RBP15.12■□□□□ 0.01
SNX1-209ENST00000559961 MFSD14CQ5VZR4 134 aa15.12■□□□□ 0.01
SNX1-209ENST00000559961 GPR142Q7Z601 462 aa15.12■□□□□ 0.01
SNX1-209ENST00000559961 TANGO6Q9C0B7 1094 aa15.12■□□□□ 0.01
SNX1-209ENST00000559961 RPAP3Q9H6T3 665 aaPredicted RBP15.12■□□□□ 0.01
SNX1-209ENST00000559961 SLC4A4Q9Y6R1 1079 aa15.12■□□□□ 0.01
SNX1-209ENST00000559961 TNRC18O15417 2968 aaPredicted RBP15.12■□□□□ 0.01
SNX1-209ENST00000559961 RBBP6Q7Z6E9 1792 aaKnown RBP15.11■□□□□ 0.01
SNX1-209ENST00000559961 TCRBV5S4A2TA0A5A2 114 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 VCAM1P19320 739 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 COG2Q14746 738 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 ACER1Q8TDN7 264 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 EDC3Q96F86 508 aaKnown RBP15.11■□□□□ 0.01
SNX1-209ENST00000559961 TXNRD2Q9NNW7 524 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 SLC5A4Q9NY91 659 aa15.11■□□□□ 0.01
SNX1-209ENST00000559961 SLC15A5A6NIM6 579 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 PRKAR2AP13861 404 aaKnown RBP15.1■□□□□ 0.01
SNX1-209ENST00000559961 ATP2B2Q01814 1243 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 GABPAQ06546 454 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 Q3C1V9 767 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 LPAR1Q92633 364 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 PAWRQ96IZ0 340 aaKnown RBP15.1■□□□□ 0.01
SNX1-209ENST00000559961 APBA2Q99767 749 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 NBPF3Q9H094 633 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 ZNF287Q9HBT7 754 aa15.1■□□□□ 0.01
SNX1-209ENST00000559961 COLQQ9Y215 455 aaPredicted RBP15.1■□□□□ 0.01
SNX1-209ENST00000559961 ZSWIM8A7E2V4 1837 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 USP17L12C9JPN9 530 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 USP17L21D6R901 530 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 ERC2O15083 957 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 RAD21O60216 631 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 SMARCA5O60264 1052 aaPredicted RBP15.09■□□□□ 0.01
SNX1-209ENST00000559961 ZFYP08048 801 aaPredicted RBP15.09■□□□□ 0.01
SNX1-209ENST00000559961 ICA1Q05084 483 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 MAP2K5Q13163 448 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 C20orf194Q5TEA3 1177 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 CHRDL2Q6WN34 429 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 DPP9Q86TI2 863 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 MB21D1Q8N884 522 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 CRISPLD2Q9H0B8 497 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 PORCNQ9H237 461 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 MKNK2Q9HBH9 465 aa15.09■□□□□ 0.01
SNX1-209ENST00000559961 PRKAB2O43741 272 aa15.08■□□□□ 0
SNX1-209ENST00000559961 STRNO43815 780 aa15.08■□□□□ 0
SNX1-209ENST00000559961 APPP05067 770 aa15.08■□□□□ 0
SNX1-209ENST00000559961 CDK8P49336 464 aa15.08■□□□□ 0
SNX1-209ENST00000559961 PLS1Q14651 629 aa15.08■□□□□ 0
SNX1-209ENST00000559961 C12orf60Q5U649 245 aa15.08■□□□□ 0
SNX1-209ENST00000559961 SAMD1Q6SPF0 538 aaPredicted RBP15.08■□□□□ 0
SNX1-209ENST00000559961 LBX2Q6XYB7 198 aa15.08■□□□□ 0
SNX1-209ENST00000559961 UBE2Q1Q7Z7E8 422 aa15.08■□□□□ 0
SNX1-209ENST00000559961 TRIB2Q92519 343 aa15.08■□□□□ 0
SNX1-209ENST00000559961 DYNLL2Q96FJ2 89 aa15.08■□□□□ 0
SNX1-209ENST00000559961 DCTPP1Q9H773 170 aa15.08■□□□□ 0
SNX1-209ENST00000559961 KANSL2Q9H9L4 492 aa15.08■□□□□ 0
SNX1-209ENST00000559961 GOPCQ9HD26 462 aa15.08■□□□□ 0
SNX1-209ENST00000559961 ARPP21Q9UBL0 812 aaPredicted RBP15.08■□□□□ 0
SNX1-209ENST00000559961 HTTP42858 3142 aa15.08■□□□□ 0
SNX1-209ENST00000559961 PEX10O60683 326 aa15.07■□□□□ 0
SNX1-209ENST00000559961 FLOT1O75955 427 aa15.07■□□□□ 0
SNX1-209ENST00000559961 CYP2D6P10635 497 aa15.07■□□□□ 0
SNX1-209ENST00000559961 GNAT2P19087 354 aa15.07■□□□□ 0
SNX1-209ENST00000559961 PTPREP23469 700 aa15.07■□□□□ 0
SNX1-209ENST00000559961 CNGA1P29973 690 aa15.07■□□□□ 0
SNX1-209ENST00000559961 MORN1Q5T089 497 aa15.07■□□□□ 0
SNX1-209ENST00000559961 C11orf49Q9H6J7 331 aa15.07■□□□□ 0
SNX1-209ENST00000559961 CTDP1Q9Y5B0 961 aaPredicted RBP15.07■□□□□ 0
SNX1-209ENST00000559961 PHIPQ8WWQ0 1821 aa15.07■□□□□ 0
SNX1-209ENST00000559961 SPDYE16A6NNV3 312 aaPredicted RBP15.06■□□□□ 0
SNX1-209ENST00000559961 RNF113AO15541 343 aaKnown RBP15.06■□□□□ 0
SNX1-209ENST00000559961 GUCY1A2P33402 732 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms