RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 EXOC5O00471 708 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 PNMA6AP0CW24 399 aaPredicted RBP18.9■□□□□ 0.62
SPG11-215ENST00000559193 CD44P16070 742 aaKnown RBP18.9■□□□□ 0.62
SPG11-215ENST00000559193 CASQ1P31415 396 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 KRT2P35908 639 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 AKAP17AQ02040 695 aaKnown RBP18.9■□□□□ 0.62
SPG11-215ENST00000559193 SH3RF1Q7Z6J0 888 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 KIFC2Q96AC6 838 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 RIOK1Q9BRS2 568 aaKnown RBP18.9■□□□□ 0.62
SPG11-215ENST00000559193 DESI2Q9BSY9 194 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 ZNF804BA4D1E1 1349 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 PLEKHA8P1O95397 391 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 CASP1P29466 404 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 MAP3K9P80192 1104 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 CUL4BQ13620 913 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 PPP2R5BQ15173 497 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 PARP10Q53GL7 1025 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 ZSCAN10Q96SZ4 725 aaPredicted RBP18.9■□□□□ 0.62
SPG11-215ENST00000559193 ABCF2Q9UG63 623 aa18.9■□□□□ 0.62
SPG11-215ENST00000559193 CYP2D7A0A087X1C5 515 aa18.89■□□□□ 0.62
SPG11-215ENST00000559193 TEX33O43247 280 aa18.89■□□□□ 0.62
SPG11-215ENST00000559193 AFMP43652 599 aa18.89■□□□□ 0.62
SPG11-215ENST00000559193 CRKLP46109 303 aaKnown RBP18.89■□□□□ 0.62
SPG11-215ENST00000559193 SYMPKQ92797 1274 aaKnown RBP18.89■□□□□ 0.62
SPG11-215ENST00000559193 PAGE5Q96GU1 130 aa18.89■□□□□ 0.62
SPG11-215ENST00000559193 LAMB2P55268 1798 aa18.89■□□□□ 0.62
SPG11-215ENST00000559193 PRPF3O43395 683 aaKnown RBP18.89■□□□□ 0.61
SPG11-215ENST00000559193 XBP1P17861 261 aa18.89■□□□□ 0.61
SPG11-215ENST00000559193 MTF1Q14872 753 aa18.89■□□□□ 0.61
SPG11-215ENST00000559193 MRFAP1Q9Y605 127 aa18.89■□□□□ 0.61
SPG11-215ENST00000559193 SYNRGQ9UMZ2 1314 aa18.89■□□□□ 0.61
SPG11-215ENST00000559193 NOM1Q5C9Z4 860 aaKnown RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 SPATA1Q5VX52 437 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 MRPL44Q9H9J2 332 aaKnown RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 ARGLU1Q9NWB6 273 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 PLA2G4AP47712 749 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 STX17P56962 302 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 CT47A1Q5JQC4 288 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 KLHL10Q6JEL2 608 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 NIP7Q9Y221 180 aaKnown RBP eCLIP18.88■□□□□ 0.61
SPG11-215ENST00000559193 V9GY48 417 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 CACNA1SQ13698 1873 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 COL22A1Q8NFW1 1626 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 COL14A1Q05707 1796 aaKnown RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 WTIPA6NIX2 430 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 AKR1B15C9JRZ8 316 aaPredicted RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 GYG1P46976 350 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 DYNLL1P63167 89 aaKnown RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 DPYDQ12882 1025 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 KARSQ15046 597 aaKnown RBP18.88■□□□□ 0.61
SPG11-215ENST00000559193 NPY5RQ15761 445 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 CDKAL1Q5VV42 579 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 TMCO3Q6UWJ1 677 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 TNFRSF25Q93038 417 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 PANX2Q96RD6 677 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 EPC1Q9H2F5 836 aa18.88■□□□□ 0.61
SPG11-215ENST00000559193 SOWAHDA6NJG2 315 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 PBX1P40424 430 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 IFIT1BQ5T764 474 aaKnown RBP18.87■□□□□ 0.61
SPG11-215ENST00000559193 FERMT2Q96AC1 680 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 PPP2R3AQ06190 1150 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 TROAPQ12815 778 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 CATIPQ7Z7H3 387 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 SMYD4Q8IYR2 804 aaPredicted RBP18.87■□□□□ 0.61
SPG11-215ENST00000559193 CCDC34Q96HJ3 373 aa18.87■□□□□ 0.61
SPG11-215ENST00000559193 ADD3Q9UEY8 706 aaKnown RBP18.87■□□□□ 0.61
SPG11-215ENST00000559193 RREB1Q92766 1687 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 TPM1P09493 284 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 RBM28Q9NW13 759 aaKnown RBP18.86■□□□□ 0.61
SPG11-215ENST00000559193 STRCQ7RTU9 1775 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 MYH2Q9UKX2 1941 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 PPP1R3GB7ZBB8 358 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 SEC31AO94979 1220 aaKnown RBP18.86■□□□□ 0.61
SPG11-215ENST00000559193 RBL2Q08999 1139 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 ZNF174Q15697 407 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 RAD9BQ6WBX8 426 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 IGSF22Q8N9C0 903 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 ZNF384Q8TF68 577 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 BRIP1Q9BX63 1249 aa18.86■□□□□ 0.61
SPG11-215ENST00000559193 WNK3Q9BYP7 1800 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 BMP15O95972 392 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 ATP6V1AP38606 617 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 TMTC3Q6ZXV5 915 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 RSRC2Q7L4I2 434 aaKnown RBP18.85■□□□□ 0.61
SPG11-215ENST00000559193 GSDMAQ96QA5 445 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 CNTNAP5Q8WYK1 1306 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 DLEC1Q9Y238 1755 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 CCDC175P0C221 793 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 ITPK1Q13572 414 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 TTC38Q5R3I4 469 aa18.85■□□□□ 0.61
SPG11-215ENST00000559193 IRX2Q9BZI1 471 aaPredicted RBP18.85■□□□□ 0.61
SPG11-215ENST00000559193 BAZ2AQ9UIF9 1905 aaKnown RBP18.84■□□□□ 0.61
SPG11-215ENST00000559193 A0A1B0GUL6 1792 aa18.84■□□□□ 0.61
SPG11-215ENST00000559193 FGRP09769 529 aa18.84■□□□□ 0.61
SPG11-215ENST00000559193 CDC5LQ99459 802 aaKnown RBP18.84■□□□□ 0.61
SPG11-215ENST00000559193 ADGRG1Q9Y653 693 aa18.84■□□□□ 0.61
SPG11-215ENST00000559193 XDHP47989 1333 aa18.84■□□□□ 0.61
SPG11-215ENST00000559193 ATP2C1P98194 919 aaPredicted RBP18.84■□□□□ 0.61
SPG11-215ENST00000559193 EVX2Q03828 476 aa18.84■□□□□ 0.61
SPG11-215ENST00000559193 TEX35Q5T0J7 233 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms