RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 ERVK-9P63128 1117 aa18.79■□□□□ 0.6
TPM1-211ENST00000558314 ERVK-24P63145 666 aa18.79■□□□□ 0.6
TPM1-211ENST00000558314 SEPT2Q15019 361 aa18.79■□□□□ 0.6
TPM1-211ENST00000558314 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.79■□□□□ 0.6
TPM1-211ENST00000558314 USP17L15C9J2P7 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L13C9JLJ4 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L11C9JVI0 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L18D6R9N7 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L22D6RA61 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L17D6RBQ6 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L19D6RCP7 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L20D6RJB6 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 PRKAB2O43741 272 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 MBD4O95243 580 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP14P54578 494 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 USP17L24Q0WX57 530 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 TMED8Q6PL24 325 aaPredicted RBP18.78■□□□□ 0.6
TPM1-211ENST00000558314 SAMD1Q6SPF0 538 aaPredicted RBP18.78■□□□□ 0.6
TPM1-211ENST00000558314 TRIB2Q92519 343 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 PORCNQ9H237 461 aa18.78■□□□□ 0.6
TPM1-211ENST00000558314 HMX1Q9NP08 348 aaPredicted RBP18.78■□□□□ 0.6
TPM1-211ENST00000558314 VCAM1P19320 739 aa18.77■□□□□ 0.6
TPM1-211ENST00000558314 MAPK4P31152 587 aa18.77■□□□□ 0.6
TPM1-211ENST00000558314 SLC44A5Q8NCS7 719 aa18.77■□□□□ 0.6
TPM1-211ENST00000558314 DIS3LQ8TF46 1054 aaKnown RBP18.77■□□□□ 0.6
TPM1-211ENST00000558314 DYNLL2Q96FJ2 89 aa18.77■□□□□ 0.6
TPM1-211ENST00000558314 PAWRQ96IZ0 340 aaKnown RBP18.77■□□□□ 0.6
TPM1-211ENST00000558314 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.77■□□□□ 0.6
TPM1-211ENST00000558314 PAK6Q9NQU5 681 aaPredicted RBP18.77■□□□□ 0.6
TPM1-211ENST00000558314 NR2E3Q9Y5X4 410 aa18.77■□□□□ 0.6
TPM1-211ENST00000558314 CEP290O15078 2479 aa18.77■□□□□ 0.59
TPM1-211ENST00000558314 NAV1Q8NEY1 1877 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 TCRBV5S4A2TA0A5A2 114 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 EVI5O60447 810 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 CHGBP05060 677 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 ZKSCAN1P17029 563 aaPredicted RBP18.76■□□□□ 0.59
TPM1-211ENST00000558314 GPR142Q7Z601 462 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 PLEKHH3Q7Z736 793 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 UBE2Q1Q7Z7E8 422 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 GTF3C2Q8WUA4 911 aaPredicted RBP18.76■□□□□ 0.59
TPM1-211ENST00000558314 LRRCC1Q9C099 1032 aa18.76■□□□□ 0.59
TPM1-211ENST00000558314 RPAP3Q9H6T3 665 aaPredicted RBP18.76■□□□□ 0.59
TPM1-211ENST00000558314 DCP1AQ9NPI6 582 aaPredicted RBP18.76■□□□□ 0.59
TPM1-211ENST00000558314 RPTORQ8N122 1335 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 PRKAR2AP13861 404 aaKnown RBP18.75■□□□□ 0.59
TPM1-211ENST00000558314 ATP5JP18859 108 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 ADD2P35612 726 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 CATSPERGQ6ZRH7 1159 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 SOCS4Q8WXH5 440 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 KIAA1683Q9H0B3 1180 aa18.75■□□□□ 0.59
TPM1-211ENST00000558314 CYP2D7A0A087X1C5 515 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 GUCY1A2P33402 732 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 RGS2P41220 211 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 CCNA1P78396 465 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 ATP2B2Q01814 1243 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 CCL14Q16627 93 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 POTEEQ6S8J3 1075 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 NECAB2Q7Z6G3 386 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 CLEC10AQ8IUN9 316 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 AMOTL1Q8IY63 956 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 C12orf42Q96LP6 360 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 HAUS7Q99871 368 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 TANGO6Q9C0B7 1094 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 RABGAP1Q9Y3P9 1069 aa18.74■□□□□ 0.59
TPM1-211ENST00000558314 RAD21O60216 631 aa18.73■□□□□ 0.59
TPM1-211ENST00000558314 CNMDO75829 334 aa18.73■□□□□ 0.59
TPM1-211ENST00000558314 FXR1P51114 621 aaKnown RBP eCLIP18.73■□□□□ 0.59
TPM1-211ENST00000558314 GABPAQ06546 454 aa18.73■□□□□ 0.59
TPM1-211ENST00000558314 DDRGK1Q96HY6 314 aa18.73■□□□□ 0.59
TPM1-211ENST00000558314 SLC4A4Q9Y6R1 1079 aa18.73■□□□□ 0.59
TPM1-211ENST00000558314 A0A1W2PRG0 241 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 GLRX3O76003 335 aaKnown RBP18.72■□□□□ 0.59
TPM1-211ENST00000558314 TSHZ3Q63HK5 1081 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 C7orf61Q8IZ16 206 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 STK11IPQ8N1F8 1099 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 CRISPLD2Q9H0B8 497 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 PCDH10Q9P2E7 1040 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 RBM27Q9P2N5 1060 aaKnown RBP18.72■□□□□ 0.59
TPM1-211ENST00000558314 IVNS1ABPQ9Y6Y0 642 aa18.72■□□□□ 0.59
TPM1-211ENST00000558314 SMIM22K7EJ46 135 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 AKR1B1P15121 316 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 CACNB2Q08289 660 aaPredicted RBP18.71■□□□□ 0.59
TPM1-211ENST00000558314 ZSCAN25Q6NSZ9 544 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 SPICE1Q8N0Z3 855 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 APBA2Q99767 749 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 ATP8A2Q9NTI2 1148 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 BTBD7Q9P203 1132 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 SWAP70Q9UH65 585 aa18.71■□□□□ 0.59
TPM1-211ENST00000558314 PLXNB2O15031 1838 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 SPDYE16A6NNV3 312 aaPredicted RBP18.7■□□□□ 0.58
TPM1-211ENST00000558314 USP17L12C9JPN9 530 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 USP17L21D6R901 530 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 XRCC5P13010 732 aaKnown RBP18.7■□□□□ 0.58
TPM1-211ENST00000558314 CCND3P30281 292 aaPredicted RBP18.7■□□□□ 0.58
TPM1-211ENST00000558314 ICA1Q05084 483 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 MAP2K5Q13163 448 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 PLS1Q14651 629 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 MORN1Q5T089 497 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 TMEM179Q6ZVK1 233 aa18.7■□□□□ 0.58
TPM1-211ENST00000558314 TRMT44Q8IYL2 757 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms