RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KCNJ6P48051 423 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 CLCN6P51797 869 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 TROAPQ12815 778 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 DPYDQ12882 1025 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 SPECC1LQ69YQ0 1117 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 CTR9Q6PD62 1173 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 TMTC2Q8N394 836 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 FAM84BQ96KN1 310 aaPredicted RBP14.71□□□□□ -0.05
LDLR-207ENST00000558013 PHF20Q9BVI0 1012 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 PARP3Q9Y6F1 533 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 MYH2Q9UKX2 1941 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 MYH14Q7Z406 1995 aaKnown RBP14.71□□□□□ -0.05
LDLR-207ENST00000558013 MLKLQ8NB16 471 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 ENOX1Q8TC92 643 aaKnown RBP14.71□□□□□ -0.05
LDLR-207ENST00000558013 AK7Q96M32 723 aa14.71□□□□□ -0.05
LDLR-207ENST00000558013 AATFQ9NY61 560 aaKnown RBP eCLIP14.71□□□□□ -0.05
LDLR-207ENST00000558013 NID2Q14112 1375 aa14.71□□□□□ -0.06
LDLR-207ENST00000558013 SOWAHDA6NJG2 315 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 GNG11P61952 73 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 PTF1AQ7RTS3 328 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 SRBD1Q8N5C6 995 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 PAGE5Q96GU1 130 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 RNF26Q9BY78 433 aaPredicted RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 MINPP1Q9UNW1 487 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 BAZ2AQ9UIF9 1905 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 SPATA20Q8TB22 786 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 HOOK1Q9UJC3 728 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 H2AFXP16104 143 aaPredicted RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 PARP10Q53GL7 1025 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 UTP14CQ5TAP6 766 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 APTXQ7Z2E3 356 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 ANKRD18AQ8IVF6 992 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 MRPL44Q9H9J2 332 aaKnown RBP14.7□□□□□ -0.06
LDLR-207ENST00000558013 BCL9LQ86UU0 1499 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 ZNF804BA4D1E1 1349 aa14.7□□□□□ -0.06
LDLR-207ENST00000558013 DOCK2Q92608 1830 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 ARHGAP6O43182 974 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 SEC31AO94979 1220 aaKnown RBP14.69□□□□□ -0.06
LDLR-207ENST00000558013 PRDX5P30044 214 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 KRT2P35908 639 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 PTGDRQ13258 359 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 NR1I3Q14994 352 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 CREBRFQ8IUR6 639 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 ZNF579Q8NAF0 562 aaKnown RBP14.69□□□□□ -0.06
LDLR-207ENST00000558013 MAPK8IP1Q9UQF2 711 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 MTMR7Q9Y216 660 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 CATIPQ7Z7H3 387 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 NHSL1Q5SYE7 1610 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 STRCQ7RTU9 1775 aa14.69□□□□□ -0.06
LDLR-207ENST00000558013 CICQ96RK0 1608 aaPredicted RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 TFRCP02786 760 aaKnown RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 PLCD1P51178 756 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 IL17AQ16552 155 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 PIK3AP1Q6ZUJ8 805 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 TXNRD3Q86VQ6 643 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 NUTM2AQ8IVF1 878 aaPredicted RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 GTPBP4Q9BZE4 634 aaKnown RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 ZSWIM4Q9H7M6 989 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 LZTFL1Q9NQ48 299 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 ANAPC4Q9UJX5 808 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 TIAM2Q8IVF5 1701 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 ABL1P00519 1130 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 MCM7P33993 719 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 MECOMQ03112 1051 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 RBL2Q08999 1139 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 CDC5LQ99459 802 aaKnown RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 MTRQ99707 1265 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 PHLPP2Q6ZVD8 1323 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 SLFN14P0C7P3 912 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 CCT6AP40227 531 aaKnown RBP14.68□□□□□ -0.06
LDLR-207ENST00000558013 KRT222Q8N1A0 295 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 UBXN4Q92575 508 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 CEP131Q9UPN4 1083 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 FHOD1Q9Y613 1164 aa14.68□□□□□ -0.06
LDLR-207ENST00000558013 PRPF3O43395 683 aaKnown RBP14.67□□□□□ -0.06
LDLR-207ENST00000558013 CUL4BQ13620 913 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 MNS1Q8NEH6 495 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 RASGRP4Q8TDF6 673 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 TNFRSF25Q93038 417 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 BCORQ6W2J9 1755 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 ARAP2Q8WZ64 1704 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 RNF225M0QZC1 329 aaPredicted RBP14.67□□□□□ -0.06
LDLR-207ENST00000558013 GTF2E1P29083 439 aaPredicted RBP14.67□□□□□ -0.06
LDLR-207ENST00000558013 CAVIN4Q5BKX8 364 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 RAD9BQ6WBX8 426 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 ZNF771Q7L3S4 317 aaPredicted RBP14.67□□□□□ -0.06
LDLR-207ENST00000558013 IQCA1Q86XH1 822 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 DOT1LQ8TEK3 1739 aa14.67□□□□□ -0.06
LDLR-207ENST00000558013 A0A1B0GTH6 734 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 NUTM2BA6NNL0 878 aaPredicted RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 NUTM2EB1AL46 878 aaPredicted RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 PPP1R3GB7ZBB8 358 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 STX10O60499 249 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 TADA3O75528 432 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 TTC38Q5R3I4 469 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 TMTC3Q6ZXV5 915 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 GPKOWQ92917 476 aaPredicted RBP eCLIP14.66□□□□□ -0.067e-9■□□□□ 10.9
LDLR-207ENST00000558013 NSUN4Q96CB9 384 aaKnown RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 GNL3LQ9NVN8 582 aaKnown RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 RTL9Q8NET4 1388 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms