RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 RASSF10A6NK89 507 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 IRF6O14896 467 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 RAD21O60216 631 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 GJA5P36382 358 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 TSGA10IPQ3SY00 556 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 SPRYD7Q5W111 196 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 KCNB2Q92953 911 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 CCDC102AQ96A19 550 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 HHIPL1Q96JK4 782 aa16.55■□□□□ 0.24
VIPAS39-208ENST00000556412 SLC10A3P09131 477 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 EEF2P13639 858 aaKnown RBP16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 CPA1P15085 419 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 ECE1P42892 770 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 PPIL2Q13356 520 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 MTMR2Q13614 643 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 COL9A3Q14050 684 aaPredicted RBP16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 MB21D2Q8IYB1 491 aaPredicted RBP16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 ZNF280CQ8ND82 737 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 ACER1Q8TDN7 264 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 CAPNS2Q96L46 248 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 ARHGEF10LQ9HCE6 1279 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 IL17RBQ9NRM6 502 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 MTMR4Q9NYA4 1195 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 CLIP2Q9UDT6 1046 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 PLIN4Q96Q06 1357 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 PRC1O43663 620 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 CASTP20810 708 aaKnown RBP16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 PSMA5P28066 241 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 ZSCAN10Q96SZ4 725 aaPredicted RBP16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 AFG3L2Q9Y4W6 797 aa16.54■□□□□ 0.24
VIPAS39-208ENST00000556412 TNKSO95271 1327 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 IGKV6D-41A0A0C4DH26 115 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 IFIT3O14879 490 aaKnown RBP16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 TTLL1O95922 423 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 MCM5P33992 734 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 NT5C2P49902 561 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 BLOC1S2Q6QNY1 142 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 TCEANC2Q96MN5 208 aa16.53■□□□□ 0.24
VIPAS39-208ENST00000556412 A0A1W2PRG0 241 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 ERICH2A1L162 156 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 USP17L10C9JJH3 530 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 ZBTB48P10074 688 aaPredicted RBP16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 ANTXR2P58335 489 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 SART3Q15020 963 aaKnown RBP16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 LRRC47Q8N1G4 583 aaKnown RBP16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 CHMP4CQ96CF2 233 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 WDR18Q9BV38 432 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 LRRC2Q9BYS8 371 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 TBC1D2Q9BYX2 928 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 UPF3BQ9BZI7 483 aaKnown RBP16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 MTMR7Q9Y216 660 aa16.52■□□□□ 0.24
VIPAS39-208ENST00000556412 TRPM7Q96QT4 1865 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 FAM155AB1AL88 458 aaPredicted RBP16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 AOC2O75106 756 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 HMGB1P09429 215 aaKnown RBP16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 HMGCS2P54868 508 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 ANAPC15P60006 121 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 FGD1P98174 961 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 SNAPC2Q13487 334 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 DGKZQ13574 1117 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 TMEM67Q5HYA8 995 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 PPP4R3BQ5MIZ7 849 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 SIAH1Q8IUQ4 282 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 SH2D4AQ9H788 454 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 TCP11L1Q9NUJ3 509 aa16.52■□□□□ 0.23
VIPAS39-208ENST00000556412 VEGFBP49765 207 aa16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 GTF2A2P52657 109 aa16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 GADL1Q6ZQY3 521 aa16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 DHX32Q7L7V1 743 aaKnown RBP16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 ENAHQ8N8S7 591 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 NYAP2Q9P242 653 aa16.51■□□□□ 0.23
VIPAS39-208ENST00000556412 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 LAMA4Q16363 1823 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 CXCL11O14625 94 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 BACE1P56817 501 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 CCDC178Q5BJE1 867 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 IFIT1BQ5T764 474 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 SPICE1Q8N0Z3 855 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 GPHNQ9NQX3 736 aaPredicted RBP16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 TMOD4Q9NZQ9 345 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 ISY1Q9ULR0 285 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 KCNH4Q9UQ05 1017 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 CYP46A1Q9Y6A2 500 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 OTOFQ9HC10 1997 aa16.5■□□□□ 0.23
VIPAS39-208ENST00000556412 CCL15-CCL14A0A0B4J2E2 113 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 KIF23Q02241 960 aaPredicted RBP16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 NOGQ13253 232 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 WTAPQ15007 396 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 CCL15Q16663 113 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 ZIC5Q96T25 663 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 TMEM47Q9BQJ4 181 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 KIAA1683Q9H0B3 1180 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 KAT14Q9H8E8 782 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 TMX2Q9Y320 296 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 CETPP11597 493 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 RPS6KB1P23443 525 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 RBM25P49756 843 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 USP14P54578 494 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 RCSD1Q6JBY9 416 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 USP17L2Q6R6M4 530 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms