RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 PHIPQ8WWQ0 1821 aa17■□□□□ 0.31
SHMT2-210ENST00000553950 NID2Q14112 1375 aa17■□□□□ 0.31
SHMT2-210ENST00000553950 IGKV6D-41A0A0C4DH26 115 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 TOP1P11387 765 aaKnown RBP16.99■□□□□ 0.31
SHMT2-210ENST00000553950 NOVP48745 357 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 EVCP57679 992 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 TOB2Q14106 344 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-210ENST00000553950 PPP2R5BQ15173 497 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 MAP1SQ66K74 1059 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-210ENST00000553950 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 CATIPQ7Z7H3 387 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 SCYL3Q8IZE3 742 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 ZNF274Q96GC6 653 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-210ENST00000553950 CEP95Q96GE4 821 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 PICK1Q9NRD5 415 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 MTMR4Q9NYA4 1195 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 STX8Q9UNK0 236 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 SCAF8Q9UPN6 1271 aaKnown RBP16.99■□□□□ 0.31
SHMT2-210ENST00000553950 CSADQ9Y600 493 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 SLC12A7Q9Y666 1083 aa16.99■□□□□ 0.31
SHMT2-210ENST00000553950 MYH6P13533 1939 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 GOLGA8BA8MQT2 603 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 PHF20L1A8MW92 1017 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 DHX16O60231 1041 aaKnown RBP16.98■□□□□ 0.31
SHMT2-210ENST00000553950 GDF11O95390 407 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 GH2P01242 217 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 MAP3K11Q16584 847 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 KLRG1Q96E93 195 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 ZKSCAN3Q9BRR0 538 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 LRRC2Q9BYS8 371 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 AS3MTQ9HBK9 375 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 NYAP2Q9P242 653 aa16.98■□□□□ 0.31
SHMT2-210ENST00000553950 KLF18A0A0U1RQI7 1052 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 CCDC196A0A1B0GTZ2 297 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 ZBTB43O43298 467 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 POTEIP0CG38 1075 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 POTEJP0CG39 1038 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 TTLL12Q14166 644 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-210ENST00000553950 RAB3GAP1Q15042 981 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 APOA5Q6Q788 366 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 SMC1BQ8NDV3 1235 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.97■□□□□ 0.318e-7■■□□□ 11.7
SHMT2-210ENST00000553950 MAP3K14Q99558 947 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 PTPRFP10586 1907 aa16.97■□□□□ 0.31
SHMT2-210ENST00000553950 YY1P25490 414 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 APOBRQ0VD83 1088 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 CPLX2Q6PUV4 134 aaKnown RBP16.96■□□□□ 0.31
SHMT2-210ENST00000553950 ANKRD13AQ8IZ07 590 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 ZNF654Q8IZM8 581 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 PNMA1Q8ND90 353 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 SLKQ9H2G2 1235 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-210ENST00000553950 IL17RBQ9NRM6 502 aa16.96■□□□□ 0.31
SHMT2-210ENST00000553950 NAP1L2Q9ULW6 460 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-210ENST00000553950 HSP90AA1P07900 732 aaKnown RBP16.95■□□□□ 0.3
SHMT2-210ENST00000553950 KIF5BP33176 963 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 METAP2P50579 478 aaKnown RBP eCLIP16.95■□□□□ 0.35e-7■■■□□ 16.2
SHMT2-210ENST00000553950 MAP3K9P80192 1104 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 SEPT2Q15019 361 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 PRAMEF18Q5VWM3 479 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 RCSD1Q6JBY9 416 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 NOL8Q76FK4 1167 aaKnown RBP16.95■□□□□ 0.3
SHMT2-210ENST00000553950 CTCFLQ8NI51 663 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-210ENST00000553950 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
SHMT2-210ENST00000553950 TMX3Q96JJ7 454 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.95■□□□□ 0.35e-8■■■□□ 18.8
SHMT2-210ENST00000553950 GOPCQ9HD26 462 aa16.95■□□□□ 0.3
SHMT2-210ENST00000553950 RBM28Q9NW13 759 aaKnown RBP16.95■□□□□ 0.3
SHMT2-210ENST00000553950 LOC285556D6RIA3 1793 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 GOLGA8AA7E2F4 631 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 USP17L5A8MUK1 530 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 NMT2O60551 498 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 CDKL5O76039 1030 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 CD2BP2O95400 341 aaKnown RBP16.94■□□□□ 0.3
SHMT2-210ENST00000553950 COL9A3Q14050 684 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-210ENST00000553950 MICU3Q86XE3 530 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 C2orf69Q8N8R5 385 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 GTF3C6Q969F1 213 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 MKL1Q969V6 931 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 FEZ1Q99689 392 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 TMEM47Q9BQJ4 181 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 TPCN1Q9ULQ1 816 aa16.94■□□□□ 0.3
SHMT2-210ENST00000553950 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-210ENST00000553950 KIF3CO14782 793 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 PFKFB2O60825 505 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 USP2O75604 605 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-210ENST00000553950 EEF2P13639 858 aaKnown RBP16.93■□□□□ 0.3
SHMT2-210ENST00000553950 INPP5BP32019 993 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 GNAQP50148 359 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 USP14P54578 494 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 ATP2B2Q01814 1243 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 GMCL1P1Q8NEA9 526 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 NKX2-3Q8TAU0 364 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 INTS4Q96HW7 963 aaKnown RBP16.93■□□□□ 0.3
SHMT2-210ENST00000553950 ZNF408Q9H9D4 720 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 GBA2Q9HCG7 927 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-210ENST00000553950 CLIP2Q9UDT6 1046 aa16.93■□□□□ 0.3
SHMT2-210ENST00000553950 CPLX1O14810 134 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 TOMM70O94826 608 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 PDIA3P30101 505 aaKnown RBP16.92■□□□□ 0.3
SHMT2-210ENST00000553950 GUCY1A2P33402 732 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms