RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 FAM84BQ96KN1 310 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 XPO4Q9C0E2 1151 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 RAI14Q9P0K7 980 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 ZNF652Q9Y2D9 606 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 LOC102724159A0A0B4J2E5 919 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 BTBD18B2RXH4 712 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 TOB1P50616 345 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 WTAPQ15007 396 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 PWP2Q15269 919 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 NOM1Q5C9Z4 860 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 ISM2Q6H9L7 571 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 CCDC24Q8N4L8 307 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 ARFGAP3Q9NP61 516 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 BSDC1Q9NW68 430 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 IFNKQ9P0W0 207 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 SRP68Q9UHB9 627 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 MAGEB6P1A0A0J9YX57 407 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 PPP6R2O75170 966 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 SLC3A2P08195 630 aaKnown RBP13.97□□□□□ -0.17
SHMT2-207ENST00000553837 RTN1Q16799 776 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 SLC51AQ86UW1 340 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 AMIGO3Q86WK7 504 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 CNKSR2Q8WXI2 1034 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 CARD6Q9BX69 1037 aa13.97□□□□□ -0.17
SHMT2-207ENST00000553837 SASH3O75995 380 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 GRIN1Q05586 938 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 GNL2Q13823 731 aaKnown RBP13.96□□□□□ -0.17
SHMT2-207ENST00000553837 UBE4AQ14139 1066 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 SEC23AQ15436 765 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 TRIM65Q6PJ69 517 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 SRLQ86TD4 932 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 CRACR2BQ8N4Y2 399 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-207ENST00000553837 IQUBQ8NA54 791 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 SCN7AQ01118 1682 aa13.96□□□□□ -0.17
SHMT2-207ENST00000553837 BAZ2AQ9UIF9 1905 aaKnown RBP13.96□□□□□ -0.17
SHMT2-207ENST00000553837 TRIM66O15016 1216 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 MMP1P03956 469 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 NCAPHQ15003 741 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 RESP18Q5W5W9 173 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 REXO1L1PQ8IX06 675 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 ZNF654Q8IZM8 581 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 ADAM21Q9UKJ8 722 aa13.96□□□□□ -0.18
SHMT2-207ENST00000553837 FAM237AA0A1B0GTK4 181 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 ZSCAN12O43309 604 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 IVLP07476 585 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 SYKP43405 635 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 NLRP12P59046 1061 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 NR5A1Q13285 461 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 TRIM29Q14134 588 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 SPECC1Q5M775 1068 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 JAKMIP3Q5VZ66 844 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 NOSTRINQ8IVI9 506 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 DIS3L2Q8IYB7 885 aaKnown RBP13.95□□□□□ -0.18
SHMT2-207ENST00000553837 FANCBQ8NB91 859 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 OXER1Q8TDS5 423 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 NUP133Q8WUM0 1156 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 LCMT1Q9UIC8 334 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 ANAPC4Q9UJX5 808 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 RRP15Q9Y3B9 282 aaKnown RBP13.95□□□□□ -0.18
SHMT2-207ENST00000553837 PRDM1O75626 825 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 GUCY2CP25092 1073 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 ACTN2P35609 894 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 PNOCQ13519 176 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 LONRF3Q496Y0 759 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 SLC10A5Q5PT55 438 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 FOXP4Q8IVH2 680 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-207ENST00000553837 HSD3B7Q9H2F3 369 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.95□□□□□ -0.18
SHMT2-207ENST00000553837 CEP83Q9Y592 693 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 PARP3Q9Y6F1 533 aa13.95□□□□□ -0.18
SHMT2-207ENST00000553837 ZNF831Q5JPB2 1677 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 TNKSO95271 1327 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 MYH2Q9UKX2 1941 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 FOXN1O15353 648 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 LMAN1P49257 510 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 FBXO33Q7Z6M2 555 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 METTL16Q86W50 562 aaKnown RBP13.94□□□□□ -0.18
SHMT2-207ENST00000553837 FCHSD1Q86WN1 690 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 ENAHQ8N8S7 591 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-207ENST00000553837 GNL3LQ9NVN8 582 aaKnown RBP13.94□□□□□ -0.18
SHMT2-207ENST00000553837 TUBE1Q9UJT0 475 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 CNTNAP4Q9C0A0 1308 aa13.94□□□□□ -0.18
SHMT2-207ENST00000553837 SART3Q15020 963 aaKnown RBP13.93□□□□□ -0.18
SHMT2-207ENST00000553837 GRIPAP1Q4V328 841 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 FAM182BQ5T319 152 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 LEKR1Q6ZMV7 388 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 CCDC34Q96HJ3 373 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 FUT8Q9BYC5 575 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 RNF41Q9H4P4 317 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-207ENST00000553837 TFCP2L1Q9NZI6 479 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 DUOX1Q9NRD9 1551 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 hCG_1642624A0A1W2PR95 340 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 FAM205CA6NFA0 338 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 CCDC172P0C7W6 258 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 FUT2Q10981 343 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 CAVIN4Q5BKX8 364 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 BANK1Q8NDB2 785 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 RABGGTAQ92696 567 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 ZBTB9Q96C00 473 aa13.93□□□□□ -0.18
SHMT2-207ENST00000553837 UBAC1Q9BSL1 405 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms