RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 GREB1LQ9C091 1923 aaPredicted RBP23.13■■□□□ 1.29
PTCH1-227ENST00000553256 GNRH1P01148 92 aa23.12■■□□□ 1.29
PTCH1-227ENST00000553256 RAB3GAP1Q15042 981 aa23.12■■□□□ 1.29
PTCH1-227ENST00000553256 USP17L2Q6R6M4 530 aa23.12■■□□□ 1.29
PTCH1-227ENST00000553256 IFNL3Q8IZI9 196 aa23.12■■□□□ 1.29
PTCH1-227ENST00000553256 ARMC5Q96C12 935 aa23.12■■□□□ 1.29
PTCH1-227ENST00000553256 CCDC129Q6ZRS4 1044 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 TMEM179Q6ZVK1 233 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 CCDC17Q96LX7 622 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 P2RX7Q99572 595 aaKnown RBP23.11■■□□□ 1.29
PTCH1-227ENST00000553256 CABP5Q9NP86 173 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 MORF4L1Q9UBU8 362 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 PNMA3Q9UL41 463 aa23.11■■□□□ 1.29
PTCH1-227ENST00000553256 RASA1P20936 1047 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 PSMC4P43686 418 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 FAM110CQ1W6H9 321 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 KIAA1755Q5JYT7 1200 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 FAM227BQ96M60 508 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 TMOD4Q9NZQ9 345 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 PTCH2Q9Y6C5 1203 aa23.1■■□□□ 1.29
PTCH1-227ENST00000553256 A0A0D9SFI3 127 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 OSBPP22059 807 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 PABPC4Q13310 644 aaKnown RBP eCLIP23.09■■□□□ 1.29
PTCH1-227ENST00000553256 VPS53Q5VIR6 699 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 CLEC10AQ8IUN9 316 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 TXNRD2Q9NNW7 524 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 HELLSQ9NRZ9 838 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 SRRDQ9UH36 339 aa23.09■■□□□ 1.29
PTCH1-227ENST00000553256 VCAM1P19320 739 aa23.08■■□□□ 1.29
PTCH1-227ENST00000553256 GCLCP48506 637 aaPredicted RBP23.08■■□□□ 1.29
PTCH1-227ENST00000553256 USP14P54578 494 aa23.08■■□□□ 1.29
PTCH1-227ENST00000553256 ANKRD13CQ8N6S4 541 aa23.08■■□□□ 1.29
PTCH1-227ENST00000553256 SMCR8Q8TEV9 937 aaPredicted RBP23.08■■□□□ 1.29
PTCH1-227ENST00000553256 DDRGK1Q96HY6 314 aa23.08■■□□□ 1.29
PTCH1-227ENST00000553256 RBPJLQ9UBG7 517 aa23.08■■□□□ 1.29
PTCH1-227ENST00000553256 IGKV6D-41A0A0C4DH26 115 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 PRMT2P55345 433 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 HERVK_113P62684 666 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 ARHGEF6Q15052 776 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 CATSPERGQ6ZRH7 1159 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 TMX2Q9Y320 296 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 TACC3Q9Y6A5 838 aa23.07■■□□□ 1.28
PTCH1-227ENST00000553256 PEX10O60683 326 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 KIF22Q14807 665 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 ALX1Q15699 326 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 LBX2Q6XYB7 198 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 ZNF589Q86UQ0 364 aaPredicted RBP23.06■■□□□ 1.28
PTCH1-227ENST00000553256 AMOTL1Q8IY63 956 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 MGAMO43451 1857 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 RLFQ13129 1914 aa23.06■■□□□ 1.28
PTCH1-227ENST00000553256 MINDY4BA8MYZ0 360 aa23.05■■□□□ 1.28
PTCH1-227ENST00000553256 MPHOSPH10O00566 681 aaKnown RBP23.05■■□□□ 1.28
PTCH1-227ENST00000553256 CNMDO75829 334 aa23.05■■□□□ 1.28
PTCH1-227ENST00000553256 NMIQ13287 307 aaPredicted RBP23.05■■□□□ 1.28
PTCH1-227ENST00000553256 ZNF333Q96JL9 665 aa23.05■■□□□ 1.28
PTCH1-227ENST00000553256 MYH8P13535 1937 aa23.05■■□□□ 1.28
PTCH1-227ENST00000553256 MKI67P46013 3256 aaKnown RBP23.05■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L15C9J2P7 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L13C9JLJ4 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L11C9JVI0 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L18D6R9N7 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L22D6RA61 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L17D6RBQ6 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L19D6RCP7 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L20D6RJB6 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 GSPT1P15170 499 aaKnown RBP23.04■■□□□ 1.28
PTCH1-227ENST00000553256 SDSP20132 328 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 TDO2P48775 406 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 ICA1Q05084 483 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 PRKCZQ05513 592 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 USP17L24Q0WX57 530 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 ZYXQ15942 572 aaKnown RBP23.04■■□□□ 1.28
PTCH1-227ENST00000553256 Q3C1V9 767 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 MCMDC2Q4G0Z9 681 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 GABRQQ9UN88 632 aa23.04■■□□□ 1.28
PTCH1-227ENST00000553256 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.04■■□□□ 1.28
PTCH1-227ENST00000553256 FGRP09769 529 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 FCGRTP55899 365 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 IRX3P78415 501 aaPredicted RBP23.03■■□□□ 1.28
PTCH1-227ENST00000553256 PPARAQ07869 468 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 FEZ1Q99689 392 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 KANSL2Q9H9L4 492 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 ANAPC4Q9UJX5 808 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 GJD2Q9UKL4 321 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 DOCK3Q8IZD9 2030 aa23.03■■□□□ 1.28
PTCH1-227ENST00000553256 PLIN4Q96Q06 1357 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 FMNL1O95466 1100 aaPredicted RBP23.02■■□□□ 1.28
PTCH1-227ENST00000553256 APPP05067 770 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 EEF2P13639 858 aaKnown RBP23.02■■□□□ 1.28
PTCH1-227ENST00000553256 SOX10P56693 466 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 NACAP1Q9BZK3 213 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 VCPKMTQ9H867 229 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 ZMYM6O95789 1325 aa23.02■■□□□ 1.28
PTCH1-227ENST00000553256 SPDYE16A6NNV3 312 aaPredicted RBP23.01■■□□□ 1.27
PTCH1-227ENST00000553256 TRIM6-TRIM34B2RNG4 842 aa23.01■■□□□ 1.27
PTCH1-227ENST00000553256 ECM2O94769 699 aaPredicted RBP23.01■■□□□ 1.27
PTCH1-227ENST00000553256 HSPD1P10809 573 aaKnown RBP23.01■■□□□ 1.27
PTCH1-227ENST00000553256 NAPBQ9H115 298 aa23.01■■□□□ 1.27
PTCH1-227ENST00000553256 RPAP3Q9H6T3 665 aaPredicted RBP23.01■■□□□ 1.27
PTCH1-227ENST00000553256 MYPNQ86TC9 1320 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms