RNA–Protein interactions for RNA: ENST00000550692.1

BRF1-218, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 4

Gene BRF1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-218	ENST00000550692	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	FEZ1	Q99689	392 aa		13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	EMILIN3	Q9NT22	766 aa		13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	PNMA3	Q9UL41	463 aa		13.47	□□□□□ -0.25
BRF1-218	ENST00000550692	MINDY4B	A8MYZ0	360 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	TRIM6-TRIM34	B2RNG4	842 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	OSBP	P22059	807 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	PSMC4	P43686	418 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	USP17L2	Q6R6M4	530 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	CCDC129	Q6ZRS4	1044 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	IFNL3	Q8IZI9	196 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	STK11IP	Q8N1F8	1099 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	ANKRD13C	Q8N6S4	541 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	OSBPL3	Q9H4L5	887 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	TAOK2	Q9UL54	1235 aa		13.46	□□□□□ -0.25
BRF1-218	ENST00000550692	MYH8	P13535	1937 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692		A0A1W2PRG0	241 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	HOXA7	P31268	230 aa	Predicted RBP	13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	TDO2	P48775	406 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	SOX10	P56693	466 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	TMEM179	Q6ZVK1	233 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	CLEC10A	Q8IUN9	316 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	RILPL2	Q969X0	211 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	TRIM47	Q96LD4	638 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	C12orf42	Q96LP6	360 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	CCDC17	Q96LX7	622 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	FAM227B	Q96M60	508 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	P2RX7	Q99572	595 aa	Known RBP	13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	KIAA1683	Q9H0B3	1180 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	PTCH2	Q9Y6C5	1203 aa		13.45	□□□□□ -0.26
BRF1-218	ENST00000550692	HTT	P42858	3142 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692		A0A0D9SFI3	127 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	FOXP2	O15409	715 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	SLC34A2	O95436	690 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	FMNL1	O95466	1100 aa	Predicted RBP	13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	PDE4A	P27815	886 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	IRX3	P78415	501 aa	Predicted RBP	13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	SIAH1	Q8IUQ4	282 aa		13.44	□□□□□ -0.26
BRF1-218	ENST00000550692	PEX10	O60683	326 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	GNRH1	P01148	92 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	VCAM1	P19320	739 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	GCLC	P48506	637 aa	Predicted RBP	13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	USP14	P54578	494 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	FAM110C	Q1W6H9	321 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	VPS53	Q5VIR6	699 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	NACAP1	Q9BZK3	213 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	NAPB	Q9H115	298 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	HELLS	Q9NRZ9	838 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	SRRD	Q9UH36	339 aa		13.43	□□□□□ -0.26
BRF1-218	ENST00000550692	MGAM	O43451	1857 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	RASA1	P20936	1047 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	FCGRT	P55899	365 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	HERVK_113	P62684	666 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	ICA1	Q05084	483 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	NMI	Q13287	307 aa	Predicted RBP	13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	MCMDC2	Q4G0Z9	681 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	MKNK2	Q9HBH9	465 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	PDE4DIP	Q5VU43	2346 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	ROBO3	Q96MS0	1386 aa		13.42	□□□□□ -0.26
BRF1-218	ENST00000550692	DOCK3	Q8IZD9	2030 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L15	C9J2P7	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L13	C9JLJ4	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L11	C9JVI0	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L18	D6R9N7	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L22	D6RA61	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L17	D6RBQ6	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L19	D6RCP7	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L20	D6RJB6	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	PRDM1	O75626	825 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	EEF2	P13639	858 aa	Known RBP	13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	SDS	P20132	328 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	HOXD10	P28358	340 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	PRMT2	P55345	433 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	PRKCZ	Q05513	592 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	PPARA	Q07869	468 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	USP17L24	Q0WX57	530 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	KIAA1755	Q5JYT7	1200 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	POTEE	Q6S8J3	1075 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	CATSPERG	Q6ZRH7	1159 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	TICAM2	Q86XR7	235 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	ARMC5	Q96C12	935 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	ARHGEF10L	Q9HCE6	1279 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	TXNRD2	Q9NNW7	524 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	GABRQ	Q9UN88	632 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	TMX2	Q9Y320	296 aa		13.41	□□□□□ -0.26
BRF1-218	ENST00000550692	MYPN	Q86TC9	1320 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	TNPO2	O14787	897 aa	Known RBP	13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	ATP2B2	Q01814	1243 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692		Q3C1V9	767 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	SLC9C1	Q4G0N8	1177 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	SH3TC2	Q8TF17	1288 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	KANSL2	Q9H9L4	492 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	RBPJL	Q9UBG7	517 aa		13.4	□□□□□ -0.26
BRF1-218	ENST00000550692	MORF4L1	Q9UBU8	362 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms