RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 G3BP1Q13283 466 aaKnown RBP eCLIP7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 PODNQ7Z5L7 613 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 SKAP1Q86WV1 359 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 ERC1Q8IUD2 1116 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 SVOPQ8N4V2 548 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 KIF1BPQ96EK5 621 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 PCMTD1Q96MG8 357 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 LNPKQ9C0E8 428 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 CUEDC1Q9NWM3 386 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 GGA3Q9NZ52 723 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 HDAC9Q9UKV0 1011 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 EXOC6BQ9Y2D4 811 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 LAMB2P55268 1798 aa7.55□□□□□ -1.2
DEPDC4-209ENST00000550587 XDHP47989 1333 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 USP17L3A6NCW0 530 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 USP17L4A6NCW7 530 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 RHOQP17081 205 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 PTPN12Q05209 780 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 PKN2Q16513 984 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 USP17L1Q7RTZ2 530 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 LYSMD3Q7Z3D4 306 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 PRICKLE2Q7Z3G6 844 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 SLC51AQ86UW1 340 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 TTLL11Q8NHH1 800 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 RHPN1Q8TCX5 695 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 PCDHB9Q9Y5E1 797 aa7.54□□□□□ -1.2
DEPDC4-209ENST00000550587 PITPNM2Q9BZ72 1349 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 CASP8AP2Q9UKL3 1982 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 DDX60Q8IY21 1712 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 MYH3P11055 1940 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 SHTN1A0MZ66 631 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 ADM5C9JUS6 153 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 SMARCA5O60264 1052 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 FBXO45P0C2W1 286 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 SLURP2P0DP57 97 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 CTSWP56202 376 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 SUZ12Q15022 739 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 CCDC57Q2TAC2 916 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 TMEM259Q4ZIN3 620 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 ANGEL2Q5VTE6 544 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 PLEKHM2Q8IWE5 1019 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 CDCA5Q96FF9 252 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 MYOZ2Q9NPC6 264 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 KCNQ5Q9NR82 932 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 RNF186Q9NXI6 227 aa7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 PA2G4Q9UQ80 394 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-209ENST00000550587 MYO3BQ8WXR4 1341 aa7.52□□□□□ -1.2
DEPDC4-209ENST00000550587 AKAP11Q9UKA4 1901 aa7.52□□□□□ -1.2
DEPDC4-209ENST00000550587 TAF1P21675 1872 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 ZBBXA8MT70 800 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 FAM155AB1AL88 458 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 APBB1O00213 710 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 CIAO1O76071 339 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 SASH1O94885 1247 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 GDF11O95390 407 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 IGHMBP2P38935 993 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 KCNJ4P48050 445 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 ZNF280AP59817 542 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 IFIT5Q13325 482 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 OS9Q13438 667 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 ARMC9Q7Z3E5 817 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 CTU1Q7Z7A3 348 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 IL27Q8NEV9 243 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 CCDC85AQ96PX6 553 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 CSRNP1Q96S65 589 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 MPHOSPH8Q99549 860 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 OSBPL3Q9H4L5 887 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 GOPCQ9HD26 462 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 SEC31BQ9NQW1 1179 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 BSDC1Q9NW68 430 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 STAP2Q9UGK3 403 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 CHMP3Q9Y3E7 222 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 LRRC37AA6NMS7 1700 aa7.52□□□□□ -1.21
DEPDC4-209ENST00000550587 POLR2AP24928 1970 aaKnown RBP7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 RTL9Q8NET4 1388 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 ANKRD18BA2A2Z9 1011 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 EYA2O00167 538 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 ARHGEF15O94989 841 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 EGFRP00533 1210 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 IL15P40933 162 aaPredicted RBP7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 RNF144AP50876 292 aaPredicted RBP7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 PDE1AP54750 535 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 SREBF2Q12772 1141 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 BMP2KLQ5H9B9 411 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 ATG9AQ7Z3C6 839 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 CLASRPQ8N2M8 674 aaKnown RBP7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 TMEM151AQ8N4L1 468 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 KLHDC4Q8TBB5 520 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 ZIC5Q96T25 663 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 BACH2Q9BYV9 841 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 ANKRD2Q9GZV1 360 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 COA1Q9GZY4 146 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 SIL1Q9H173 461 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 GREM2Q9H772 168 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 LEMD3Q9Y2U8 911 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 SALL3Q9BXA9 1300 aa7.51□□□□□ -1.21
DEPDC4-209ENST00000550587 DUOX1Q9NRD9 1551 aa7.5□□□□□ -1.21
DEPDC4-209ENST00000550587 MEN1O00255 615 aa7.5□□□□□ -1.21
DEPDC4-209ENST00000550587 MYO1BO43795 1136 aa7.5□□□□□ -1.21
DEPDC4-209ENST00000550587 GAS6Q14393 721 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms