RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 GPKOWQ92917 476 aaPredicted RBP eCLIP17.14■□□□□ 0.33
USP28-214ENST00000545540 PAGE5Q96GU1 130 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 FOXP1Q9H334 677 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 RNF216Q9NWF9 866 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 SLIT2O94813 1529 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 ARHGAP6O43182 974 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 CASP14P31944 242 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 ACRBPQ8NEB7 543 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 ESR2Q92731 530 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 NUTM2BA6NNL0 878 aaPredicted RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 NUTM2EB1AL46 878 aaPredicted RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 ZNF18P17022 549 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 EIF5P55010 431 aaKnown RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 NUTM2AQ8IVF1 878 aaPredicted RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 CELF1Q92879 486 aaKnown RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 ZSCAN10Q96SZ4 725 aaPredicted RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 HINFPQ9BQA5 517 aa17.13■□□□□ 0.33
USP28-214ENST00000545540 HOOK1Q9UJC3 728 aaKnown RBP17.13■□□□□ 0.33
USP28-214ENST00000545540 PP2D1A8MPX8 630 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 PLA2G4AP47712 749 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 SARSP49591 514 aaKnown RBP17.12■□□□□ 0.33
USP28-214ENST00000545540 SEC23AQ15436 765 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 TMCO3Q6UWJ1 677 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 CCDC87Q9NVE4 849 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 ZSCAN12O43309 604 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 TADA3O75528 432 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 SASH3O75995 380 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 WWC2Q6AWC2 1192 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 TICAM2Q86XR7 235 aa17.12■□□□□ 0.33
USP28-214ENST00000545540 SRBD1Q8N5C6 995 aaKnown RBP17.12■□□□□ 0.33
USP28-214ENST00000545540 CDC5LQ99459 802 aaKnown RBP17.12■□□□□ 0.33
USP28-214ENST00000545540 TOGARAM1Q9Y4F4 1720 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 ERCC3P19447 782 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 PRDX5P30044 214 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 KRT2P35908 639 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 FXR1P51114 621 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP28-214ENST00000545540 PPP2R3AQ06190 1150 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 CUL4BQ13620 913 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 MLKLQ8NB16 471 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 ZFP91Q96JP5 570 aaPredicted RBP17.11■□□□□ 0.33
USP28-214ENST00000545540 TAB2Q9NYJ8 693 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 FAM237AA0A1B0GTK4 181 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 TBX2Q13207 712 aaPredicted RBP17.11■□□□□ 0.33
USP28-214ENST00000545540 PTF1AQ7RTS3 328 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 CATIPQ7Z7H3 387 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 ENOX1Q8TC92 643 aaKnown RBP17.11■□□□□ 0.33
USP28-214ENST00000545540 BCL9O00512 1426 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 LOC102724428A0A0B4J2F2 783 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 CCDC196A0A1B0GTZ2 297 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 SIK1P57059 783 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 NR1I3Q14994 352 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 FAM182BQ5T319 152 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 RRAGBQ5VZM2 374 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 SUGCTQ9HAC7 445 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 GDAQ9Y2T3 454 aa17.11■□□□□ 0.33
USP28-214ENST00000545540 MYH7P12883 1935 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 COL4A1P02462 1669 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 CAMTA2O94983 1202 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 NLRP5P59047 1200 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 PPFIBP1Q86W92 1011 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 SYNRGQ9UMZ2 1314 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 UBR2Q8IWV8 1755 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 TRIM49BA6NDI0 452 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 PLCD1P51178 756 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 DHX8Q14562 1220 aaKnown RBP17.1■□□□□ 0.33
USP28-214ENST00000545540 ZNF569Q5MCW4 686 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 RASSF8Q8NHQ8 419 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 GPR101Q96P66 508 aaPredicted RBP17.1■□□□□ 0.33
USP28-214ENST00000545540 KCND1Q9NSA2 647 aa17.1■□□□□ 0.33
USP28-214ENST00000545540 AKR1B15C9JRZ8 316 aaPredicted RBP17.09■□□□□ 0.33
USP28-214ENST00000545540 BMS1Q14692 1282 aaKnown RBP17.09■□□□□ 0.33
USP28-214ENST00000545540 CTR9Q6PD62 1173 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 TXNRD3Q86VQ6 643 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 NOL10Q9BSC4 688 aaKnown RBP17.09■□□□□ 0.33
USP28-214ENST00000545540 TRIM10Q9UDY6 481 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 ERVV-1B6SEH8 477 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 IL17AQ16552 155 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 TTC38Q5R3I4 469 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 DYNLL2Q96FJ2 89 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 MTRQ99707 1265 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 RIOK1Q9BRS2 568 aaKnown RBP17.09■□□□□ 0.33
USP28-214ENST00000545540 PARD6BQ9BYG5 372 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 RNF41Q9H4P4 317 aaPredicted RBP17.09■□□□□ 0.33
USP28-214ENST00000545540 STK36Q9NRP7 1315 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 ATRNO75882 1429 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 TAF1P21675 1872 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 NTSR2O95665 410 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 PHLPP2Q6ZVD8 1323 aa17.09■□□□□ 0.33
USP28-214ENST00000545540 SPEF2Q9C093 1822 aa17.08■□□□□ 0.33
USP28-214ENST00000545540 TROAPQ12815 778 aa17.08■□□□□ 0.33
USP28-214ENST00000545540 IQCA1Q86XH1 822 aa17.08■□□□□ 0.33
USP28-214ENST00000545540 NEK11Q8NG66 645 aa17.08■□□□□ 0.33
USP28-214ENST00000545540 MYH2Q9UKX2 1941 aa17.08■□□□□ 0.33
USP28-214ENST00000545540 N4BP3O15049 544 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 USP17L8P0C7I0 530 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 RHOXF2BP0C7M4 288 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 ST5P78524 1137 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
USP28-214ENST00000545540 APTXQ7Z2E3 356 aaKnown RBP17.08■□□□□ 0.32
USP28-214ENST00000545540 FAM84BQ96KN1 310 aaPredicted RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms