RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	FKBP1C	Q5VVH2	108 aa		9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	CCDC102B	Q68D86	513 aa		9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	ZGPAT	Q8N5A5	531 aa	Known RBP	9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	SSH3	Q8TE77	659 aa		9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	BAP1	Q92560	729 aa		9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	TDRD3	Q9H7E2	651 aa	Known RBP	9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	TMOD2	Q9NZR1	351 aa		9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	ANGEL1	Q9UNK9	670 aa	Known RBP	9.47	□□□□□ -0.89
SNHG1-223	ENST00000545440	PRDX5	P30044	214 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	TFCP2	Q12800	502 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	RASGRF1	Q13972	1273 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	NBPF12	Q5TAG4	269 aa	Predicted RBP	9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	FAM83A	Q86UY5	434 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZNF511	Q8NB15	262 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	SLC10A4	Q96EP9	437 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	XAGE2	Q96GT9	111 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	TEPSIN	Q96N21	525 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	CDV3	Q9UKY7	258 aa	Known RBP	9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	SIPA1L1	O43166	1804 aa		9.46	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZBTB7B	O15156	539 aa	Predicted RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	LDHB	P07195	334 aa	Known RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZBTB48	P10074	688 aa	Predicted RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	IREB2	P48200	963 aa	Known RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	ATP8B2	P98198	1209 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	G3BP1	Q13283	466 aa	Known RBP eCLIP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	PRKG1	Q13976	671 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	LINC01559	Q495D7	138 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	RNF20	Q5VTR2	975 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	PTCRA	Q6ISU1	281 aa	Predicted RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	APOBEC3H	Q6NTF7	200 aa	Known RBP	9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	ADAM32	Q8TC27	787 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	CSRNP1	Q96S65	589 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	PPP1R12C	Q9BZL4	782 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	GPR108	Q9NPR9	543 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	DAGLA	Q9Y4D2	1042 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	RFX7	Q2KHR2	1363 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	MGAM	O43451	1857 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	NAV1	Q8NEY1	1877 aa		9.45	□□□□□ -0.9
SNHG1-223	ENST00000545440	TCP10L2	B9ZVM9	353 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	RNF223	E7ERA6	249 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	ARID4A	P29374	1257 aa	Predicted RBP	9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	TIMM10	P62072	90 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	SREBF2	Q12772	1141 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	SPRYD7	Q5W111	196 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	ANKRD13A	Q8IZ07	590 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	PANK1	Q8TE04	598 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	HOOK2	Q96ED9	719 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	TMEM39B	Q9GZU3	492 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	RNF186	Q9NXI6	227 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	FZD1	Q9UP38	647 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	NOP58	Q9Y2X3	529 aa	Known RBP	9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	GAK	O14976	1311 aa		9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	DDX60L	Q5H9U9	1706 aa	Known RBP	9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	RBBP6	Q7Z6E9	1792 aa	Known RBP	9.44	□□□□□ -0.9
SNHG1-223	ENST00000545440	USP2	O75604	605 aa	Predicted RBP	9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	PDIA4	P13667	645 aa	Known RBP	9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	RFX1	P22670	979 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	TM4SF4	P48230	202 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	RPIA	P49247	311 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	CACNB3	P54284	484 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	OS9	Q13438	667 aa	Predicted RBP	9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	NBPF20	Q3BBV1	942 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	TNNI3K	Q59H18	835 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	SPTY2D1	Q68D10	685 aa	Predicted RBP	9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	PPP1R18	Q6NYC8	613 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	CEP85	Q6P2H3	762 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	SH3BP5L	Q7L8J4	393 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	DZIP1	Q86YF9	867 aa	Known RBP	9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	WNK4	Q96J92	1243 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	CLMN	Q96JQ2	1002 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	NEUROD6	Q96NK8	337 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	RCAN3	Q9UKA8	241 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	DDX19B	Q9UMR2	479 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	FPGT-TNNI3K	V9GXZ4	949 aa		9.43	□□□□□ -0.9
SNHG1-223	ENST00000545440	LOC285556	D6RIA3	1793 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	COL2A1	P02458	1487 aa	Predicted RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	MROH7-TTC4	A0A0A0MT08	1334 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	PALM3	A6NDB9	673 aa	Predicted RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	MANSC4	A6NHS7	340 aa	Predicted RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	SURF6	O75683	361 aa	Known RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	TRPA1	O75762	1119 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	UQCRFS1P1	P0C7P4	283 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	WNT7B	P56706	349 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	NOM1	Q5C9Z4	860 aa	Known RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	GORAB	Q5T7V8	394 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	CDC42EP5	Q6NZY7	148 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	RNF135	Q8IUD6	432 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	SPATA5	Q8NB90	893 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	FAM174A	Q8TBP5	190 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	PBXIP1	Q96AQ6	731 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	CFHR5	Q9BXR6	569 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	HMG20B	Q9P0W2	317 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	TFIP11	Q9UBB9	837 aa	Known RBP	9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	ABCF2	Q9UG63	623 aa		9.42	□□□□□ -0.9
SNHG1-223	ENST00000545440	ATP9B	O43861	1147 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	LZTS3	O60299	673 aa	Predicted RBP	9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	ALDH1A1	P00352	501 aa		9.41	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms