RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 TJAP1Q5JTD0 557 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 USP17L2Q6R6M4 530 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 ADGRA1Q86SQ6 560 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 TGFBRAP1Q8WUH2 860 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 AATFQ9NY61 560 aaKnown RBP eCLIP11.6□□□□□ -0.55
CHD4-212ENST00000545083 PALD1Q9ULE6 856 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 FLT1P17948 1338 aa11.6□□□□□ -0.55
CHD4-212ENST00000545083 NCOR1O75376 2440 aa11.59□□□□□ -0.55
CHD4-212ENST00000545083 GLRX3O76003 335 aaKnown RBP11.59□□□□□ -0.55
CHD4-212ENST00000545083 ARID4AP29374 1257 aaPredicted RBP11.59□□□□□ -0.55
CHD4-212ENST00000545083 MCAMP43121 646 aa11.59□□□□□ -0.55
CHD4-212ENST00000545083 FOXP4Q8IVH2 680 aaPredicted RBP11.59□□□□□ -0.55
CHD4-212ENST00000545083 C12orf42Q96LP6 360 aa11.59□□□□□ -0.55
CHD4-212ENST00000545083 NEUROD6Q96NK8 337 aa11.59□□□□□ -0.55
CHD4-212ENST00000545083 USP17L15C9J2P7 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L13C9JLJ4 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L11C9JVI0 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L18D6R9N7 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L22D6RA61 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L17D6RBQ6 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L19D6RCP7 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L20D6RJB6 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 GH2P01242 217 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 ADCYAP1R1P41586 468 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 CCNA1P78396 465 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 USP17L24Q0WX57 530 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 CATSPERGQ6ZRH7 1159 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 CRACR2BQ8N4Y2 399 aaPredicted RBP11.58□□□□□ -0.56
CHD4-212ENST00000545083 ARRDC4Q8NCT1 418 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 FERMT2Q96AC1 680 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 RNPC3Q96LT9 517 aaKnown RBP11.58□□□□□ -0.56
CHD4-212ENST00000545083 MEIS3Q99687 375 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 GINM1Q9NU53 330 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 LRP2BPQ9P2M1 347 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 SAP30BPQ9UHR5 308 aaKnown RBP11.58□□□□□ -0.56
CHD4-212ENST00000545083 AKAP2Q9Y2D5 859 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 BDP1A6H8Y1 2624 aa11.58□□□□□ -0.56
CHD4-212ENST00000545083 TMEM265A0A087WTH1 108 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 SPDYE16A6NNV3 312 aaPredicted RBP11.57□□□□□ -0.56
CHD4-212ENST00000545083 KBTBD13C9JR72 458 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 MYCNP04198 464 aaPredicted RBP11.57□□□□□ -0.56
CHD4-212ENST00000545083 VCAM1P19320 739 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 PPP4CP60510 307 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 TLE2Q04725 743 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 PRAMEF19Q5SWL8 479 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 LBX2Q6XYB7 198 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 ACER1Q8TDN7 264 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 SNRKQ9NRH2 765 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 IVNS1ABPQ9Y6Y0 642 aa11.57□□□□□ -0.56
CHD4-212ENST00000545083 SEPT4O43236 478 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 COBLO75128 1261 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 BAG3O95817 575 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 ADORA2AP29274 412 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 DYNLL1P63167 89 aaKnown RBP11.56□□□□□ -0.56
CHD4-212ENST00000545083 LRRC41Q15345 812 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 FAM47AQ5JRC9 791 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 GORABQ5T7V8 394 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 C1orf53Q5VUE5 145 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 OLFML2BQ68BL8 750 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 NAA16Q6N069 864 aaPredicted RBP11.56□□□□□ -0.56
CHD4-212ENST00000545083 FAM9BQ8IZU0 186 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 FEZ1Q99689 392 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 NOL10Q9BSC4 688 aaKnown RBP11.56□□□□□ -0.56
CHD4-212ENST00000545083 TRIM34Q9BYJ4 488 aa11.56□□□□□ -0.56
CHD4-212ENST00000545083 CDK5RAP2Q96SN8 1893 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 SRGAP3O43295 1099 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 DNAJB2P25686 324 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 ALDH1L2Q3SY69 923 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 TATDN1Q6P1N9 297 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 DPP9Q86TI2 863 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 MOV10L1Q9BXT6 1211 aaKnown RBP11.55□□□□□ -0.56
CHD4-212ENST00000545083 KIAA1683Q9H0B3 1180 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 SMC4Q9NTJ3 1288 aa11.55□□□□□ -0.56
CHD4-212ENST00000545083 CHD9Q3L8U1 2897 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 KIAA0355O15063 1070 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 HLA-DOAP06340 250 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 PLCG2P16885 1265 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 PLA2G5P39877 138 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 USP14P54578 494 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 MTX1Q13505 466 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 RAB3GAP1Q15042 981 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 PPM1EQ8WY54 764 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 ZNF576Q9H609 170 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 RPAP3Q9H6T3 665 aaPredicted RBP11.54□□□□□ -0.56
CHD4-212ENST00000545083 NOB1Q9ULX3 412 aaKnown RBP11.54□□□□□ -0.56
CHD4-212ENST00000545083 PHF24Q9UPV7 400 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 TACC3Q9Y6A5 838 aa11.54□□□□□ -0.56
CHD4-212ENST00000545083 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.53□□□□□ -0.56
CHD4-212ENST00000545083 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.53□□□□□ -0.56
CHD4-212ENST00000545083 CYP2E1P05181 493 aaPredicted RBP11.53□□□□□ -0.56
CHD4-212ENST00000545083 CLTBP09497 229 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 UQCRFS1P1P0C7P4 283 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 ERCC3P19447 782 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 GUCY1A2P33402 732 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 FOCADQ5VW36 1801 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 ZNF236Q9UL36 1845 aa11.53□□□□□ -0.56
CHD4-212ENST00000545083 E9PSI1 815 aa11.52□□□□□ -0.57
CHD4-212ENST00000545083 RAG1P15918 1043 aa11.52□□□□□ -0.57
CHD4-212ENST00000545083 PBX2P40425 430 aa11.52□□□□□ -0.57
CHD4-212ENST00000545083 FPGSQ05932 587 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms