RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, human

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-215	ENST00000543185	N4BP1	O75113	896 aa	Known RBP	21.33	■■□□□ 1.01
HDAC4-215	ENST00000543185	KSR2	Q6VAB6	950 aa		21.33	■■□□□ 1.01
HDAC4-215	ENST00000543185	IFNL2	Q8IZJ0	200 aa		21.33	■■□□□ 1.01
HDAC4-215	ENST00000543185	ACTR5	Q9H9F9	607 aa	Predicted RBP	21.33	■■□□□ 1.01
HDAC4-215	ENST00000543185	PDZD8	Q8NEN9	1154 aa		21.33	■■□□□ 1.01
HDAC4-215	ENST00000543185	NBPF14	Q5TI25	921 aa		21.33	■■□□□ 1
HDAC4-215	ENST00000543185	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	21.33	■■□□□ 1
HDAC4-215	ENST00000543185	PDE4D	Q08499	809 aa		21.33	■■□□□ 1
HDAC4-215	ENST00000543185	EXOC4	Q96A65	974 aa		21.33	■■□□□ 1
HDAC4-215	ENST00000543185	MRFAP1L1	Q96HT8	127 aa		21.33	■■□□□ 1
HDAC4-215	ENST00000543185	NYX	Q9GZU5	481 aa		21.33	■■□□□ 1
HDAC4-215	ENST00000543185	WASL	O00401	505 aa	Predicted RBP	21.32	■■□□□ 1
HDAC4-215	ENST00000543185	C6orf229	H3BNL8	230 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	ZNF622	Q969S3	477 aa	Known RBP eCLIP	21.32	■■□□□ 1
HDAC4-215	ENST00000543185	NT5C3A	Q9H0P0	336 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	KLHL30	Q0D2K2	578 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	OGFOD1	Q8N543	542 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	PHLPP2	Q6ZVD8	1323 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	MAN1A2	O60476	641 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	LMNA	P02545	664 aa	Known RBP	21.32	■■□□□ 1
HDAC4-215	ENST00000543185	NFE2L3	Q9Y4A8	694 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	KIAA0586	Q9BVV6	1533 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	DPH6	Q7L8W6	267 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	RRP15	Q9Y3B9	282 aa	Known RBP	21.32	■■□□□ 1
HDAC4-215	ENST00000543185	ABCC1	P33527	1531 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	ANGPTL2	Q9UKU9	493 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	ABCA10	Q8WWZ4	1543 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	STRN3	Q13033	797 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	DISP3	Q9P2K9	1392 aa		21.32	■■□□□ 1
HDAC4-215	ENST00000543185	SESN3	P58005	492 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	PLCB4	Q15147	1175 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	LRGUK	Q96M69	825 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	MAGEF1	Q9HAY2	307 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	KRIT1	O00522	736 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	APOBR	Q0VD83	1088 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	RABEP2	Q9H5N1	569 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	MSH6	P52701	1360 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	CHPF2	Q9P2E5	772 aa		21.31	■■□□□ 1
HDAC4-215	ENST00000543185	RAD51AP2	Q09MP3	1159 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	SART1	O43290	800 aa	Known RBP	21.3	■■□□□ 1
HDAC4-215	ENST00000543185	TAF12	Q16514	161 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	NELFB	Q8WX92	580 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	XRCC5	P13010	732 aa	Known RBP	21.3	■■□□□ 1
HDAC4-215	ENST00000543185	IPO11	Q9UI26	975 aa	Known RBP	21.3	■■□□□ 1
HDAC4-215	ENST00000543185	KDM5D	Q9BY66	1539 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	LRRC8C	Q8TDW0	803 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	DACT3	Q96B18	629 aa	Predicted RBP	21.3	■■□□□ 1
HDAC4-215	ENST00000543185	MEIS3	Q99687	375 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	TRIM31	Q9BZY9	425 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	VPS37B	Q9H9H4	285 aa		21.3	■■□□□ 1
HDAC4-215	ENST00000543185	LAMC3	Q9Y6N6	1575 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	VGLL3	A8MV65	326 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	LMNB1	P20700	586 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	KLHDC4	Q8TBB5	520 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	SPDL1	Q96EA4	605 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	VPS16	Q9H269	839 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	HAUS4	Q9H6D7	363 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	SNRK	Q9NRH2	765 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	CEP85	Q6P2H3	762 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	NBPF5P	Q86XG9	351 aa	Predicted RBP	21.29	■■□□□ 1
HDAC4-215	ENST00000543185	SYCP2	Q9BX26	1530 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185		A0A087WUV0	522 aa	Predicted RBP	21.29	■■□□□ 1
HDAC4-215	ENST00000543185	MAP3K7CL	P57077	242 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	MAST1	Q9Y2H9	1570 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	FGFR1OP2	Q9NVK5	253 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	UHRF1BP1	Q6BDS2	1440 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	AFG3L2	Q9Y4W6	797 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	PALM2	Q8IXS6	379 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	OR8K1	Q8NGG5	319 aa		21.29	■■□□□ 1
HDAC4-215	ENST00000543185	TMTC3	Q6ZXV5	915 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	CFAP61	Q8NHU2	1237 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	HMGB3	O15347	200 aa	Known RBP	21.28	■■□□□ 1
HDAC4-215	ENST00000543185	APOE	P02649	317 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	PSPC1	Q8WXF1	523 aa	Known RBP	21.28	■■□□□ 1
HDAC4-215	ENST00000543185	RRAGD	Q9NQL2	400 aa	Predicted RBP	21.28	■■□□□ 1
HDAC4-215	ENST00000543185	CARD10	Q9BWT7	1032 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	DNM2	P50570	870 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	GABPA	Q06546	454 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	MRPL50	Q8N5N7	158 aa	Known RBP	21.28	■■□□□ 1
HDAC4-215	ENST00000543185	PPIP5K1	Q6PFW1	1433 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	PPP1R2P3	Q6NXS1	205 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	KIFC3	Q9BVG8	833 aa		21.28	■■□□□ 1
HDAC4-215	ENST00000543185	EPHB4	P54760	987 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	PDZD4	Q76G19	769 aa	Predicted RBP	21.27	■■□□□ 1
HDAC4-215	ENST00000543185	LRRC8A	Q8IWT6	810 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	EIF4G3	O43432	1585 aa	Known RBP	21.27	■■□□□ 1
HDAC4-215	ENST00000543185	PALM3	A6NDB9	673 aa	Predicted RBP	21.27	■■□□□ 1
HDAC4-215	ENST00000543185	MAGEA1	P43355	309 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	MTX1	Q13505	466 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	TTC16	Q8NEE8	873 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	GFM2	Q969S9	779 aa	Known RBP	21.27	■■□□□ 1
HDAC4-215	ENST00000543185	ANKRD2	Q9GZV1	360 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	C2CD5	Q86YS7	1000 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	LIG3	P49916	1009 aa		21.27	■■□□□ 1
HDAC4-215	ENST00000543185	MAGEB6	Q8N7X4	407 aa		21.27	■□□□□ 0.99
HDAC4-215	ENST00000543185	MAP3K7	O43318	606 aa		21.27	■□□□□ 0.99
HDAC4-215	ENST00000543185	LONRF2	Q1L5Z9	754 aa		21.27	■□□□□ 0.99
HDAC4-215	ENST00000543185	KLHL7	Q8IXQ5	586 aa		21.26	■□□□□ 0.99
HDAC4-215	ENST00000543185	LINS1	Q8NG48	757 aa		21.26	■□□□□ 0.99
HDAC4-215	ENST00000543185	MAPKBP1	O60336	1514 aa		21.26	■□□□□ 0.99

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms