RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 LAMA4Q16363 1823 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 MANSC4A6NHS7 340 aaPredicted RBP14.37□□□□□ -0.11
DDX55-210ENST00000543016 PSMA5P28066 241 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 MAP2K2P36507 400 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 GTF2A2P52657 109 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 USP14P54578 494 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 SNAPC2Q13487 334 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 SEPT2Q15019 361 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 RAB3GAP1Q15042 981 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 RRP12Q5JTH9 1297 aaKnown RBP14.37□□□□□ -0.11
DDX55-210ENST00000543016 OTUD5Q96G74 571 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 NYAP2Q9P242 653 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 AFG3L2Q9Y4W6 797 aa14.37□□□□□ -0.11
DDX55-210ENST00000543016 IGKV6D-41A0A0C4DH26 115 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 FAM155AB1AL88 458 aaPredicted RBP14.36□□□□□ -0.11
DDX55-210ENST00000543016 USP17L10C9JJH3 530 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 KDM4AO75164 1064 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 TTLL1O95922 423 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 CETPP11597 493 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 GUCY1A2P33402 732 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 NOVP48745 357 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 ICA1Q05084 483 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 SART3Q15020 963 aaKnown RBP14.36□□□□□ -0.11
DDX55-210ENST00000543016 PAXIP1Q6ZW49 1069 aaPredicted RBP14.36□□□□□ -0.11
DDX55-210ENST00000543016 FASTKD5Q7L8L6 764 aaKnown RBP14.36□□□□□ -0.11
DDX55-210ENST00000543016 DGKHQ86XP1 1220 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 IL27Q8NEV9 243 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 MKL1Q969V6 931 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 CAPNS2Q96L46 248 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.36□□□□□ -0.11
DDX55-210ENST00000543016 MTMR4Q9NYA4 1195 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 NEDD4P46934 1319 aa14.36□□□□□ -0.11
DDX55-210ENST00000543016 DOCK1Q14185 1865 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 B4E1Z4 1266 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 IRF6O14896 467 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 MCM5P33992 734 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 BACE1P56817 501 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 JAG1P78504 1218 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 SREBF2Q12772 1141 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 SPP2Q13103 211 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 SH3D19Q5HYK7 790 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 FAM47AQ5JRC9 791 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 ANKS1AQ92625 1134 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 IL17RAQ96F46 866 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 NEK1Q96PY6 1258 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 UBAC1Q9BSL1 405 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 BACH2Q9BYV9 841 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 TM6SF1Q9BZW5 370 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 KIAA1683Q9H0B3 1180 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 INCENPQ9NQS7 918 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 ZSWIM5Q9P217 1185 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 TMX2Q9Y320 296 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 TACC3Q9Y6A5 838 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 WDR19Q8NEZ3 1342 aa14.35□□□□□ -0.11
DDX55-210ENST00000543016 WDR33Q9C0J8 1336 aaKnown RBP14.35□□□□□ -0.11
DDX55-210ENST00000543016 ERICH2A1L162 156 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 TESPA1A2RU30 521 aaPredicted RBP14.34□□□□□ -0.11
DDX55-210ENST00000543016 CYP4F22Q6NT55 531 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 USP17L2Q6R6M4 530 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 STOX1Q6ZVD7 989 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 RASEFQ8IZ41 740 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 TMTC2Q8N394 836 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 CEP95Q96GE4 821 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 TMEM87BQ96K49 555 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 FEZ1Q99689 392 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 ZCCHC17Q9NP64 241 aaKnown RBP14.34□□□□□ -0.11
DDX55-210ENST00000543016 SNX14Q9Y5W7 946 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 MYH8P13535 1937 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 OTOFQ9HC10 1997 aa14.34□□□□□ -0.11
DDX55-210ENST00000543016 A0A0G2JLL6 359 aaPredicted RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 SEC24BO95487 1268 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 TOP1P11387 765 aaKnown RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 EEF2P13639 858 aaKnown RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 GJA5P36382 358 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 OTUD7BQ6GQQ9 843 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 DHX32Q7L7V1 743 aaKnown RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 PRRT2Q7Z6L0 340 aaPredicted RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 MB21D2Q8IYB1 491 aaPredicted RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 PROCA1Q8NCQ7 364 aaPredicted RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 LPAR1Q92633 364 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 MS4A4AQ96JQ5 239 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 C12orf42Q96LP6 360 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 ZSCAN10Q96SZ4 725 aaPredicted RBP14.33□□□□□ -0.12
DDX55-210ENST00000543016 GOPCQ9HD26 462 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 IL17RBQ9NRM6 502 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 TMOD4Q9NZQ9 345 aa14.33□□□□□ -0.12
DDX55-210ENST00000543016 TRIM75PA6NK02 468 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 TM4SF4P48230 202 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 VEGFBP49765 207 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 PABPC4Q13310 644 aaKnown RBP eCLIP14.32□□□□□ -0.12
DDX55-210ENST00000543016 BLOC1S2Q6QNY1 142 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 SIAH1Q8IUQ4 282 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 CLIP2Q9UDT6 1046 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 STX8Q9UNK0 236 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 SLC45A1Q9Y2W3 748 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 TAF6LQ9Y6J9 622 aa14.32□□□□□ -0.12
DDX55-210ENST00000543016 GREB1LQ9C091 1923 aaPredicted RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 CCL15-CCL14A0A0B4J2E2 113 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 ALDH1A1P00352 501 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 ATXN8OSP0DMR3 200 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms