RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 USP17L13C9JLJ4 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L11C9JVI0 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L18D6R9N7 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L22D6RA61 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L17D6RBQ6 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L19D6RCP7 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L20D6RJB6 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 MBD4O95243 580 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 SGPL1O95470 568 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 ERVK-9P63128 1117 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 ERVK-24P63145 666 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 USP17L24Q0WX57 530 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 LBX2Q6XYB7 198 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 GPATCH3Q96I76 525 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 DCTPP1Q9H773 170 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 ARMT1Q9H993 441 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 TXNRD2Q9NNW7 524 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 PARP14Q460N5 1801 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 ZNF236Q9UL36 1845 aa18.86■□□□□ 0.61
VPS33A-206ENST00000542310 RLFQ13129 1914 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 VCAM1P19320 739 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 GUCY1A2P33402 732 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 ECHDC1Q9NTX5 307 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 RBPJLQ9UBG7 517 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 RABGAP1Q9Y3P9 1069 aa18.85■□□□□ 0.61
VPS33A-206ENST00000542310 GREB1LQ9C091 1923 aaPredicted RBP18.84■□□□□ 0.61
VPS33A-206ENST00000542310 FARP2O94887 1054 aaPredicted RBP18.84■□□□□ 0.61
VPS33A-206ENST00000542310 XRCC5P13010 732 aaKnown RBP18.84■□□□□ 0.61
VPS33A-206ENST00000542310 TMEM179Q6ZVK1 233 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 AMOTL1Q8IY63 956 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 TRMT44Q8IYL2 757 aaKnown RBP18.84■□□□□ 0.61
VPS33A-206ENST00000542310 DDRGK1Q96HY6 314 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 NUDT12Q9BQG2 462 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 HTATIP2Q9BUP3 242 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 BCL11AQ9H165 835 aa18.84■□□□□ 0.61
VPS33A-206ENST00000542310 SMARCA5O60264 1052 aaPredicted RBP18.83■□□□□ 0.6
VPS33A-206ENST00000542310 SEPT2Q15019 361 aa18.83■□□□□ 0.6
VPS33A-206ENST00000542310 ZYXQ15942 572 aaKnown RBP18.83■□□□□ 0.6
VPS33A-206ENST00000542310 CATSPERGQ6ZRH7 1159 aa18.83■□□□□ 0.6
VPS33A-206ENST00000542310 ACER1Q8TDN7 264 aa18.83■□□□□ 0.6
VPS33A-206ENST00000542310 CRISPLD2Q9H0B8 497 aa18.83■□□□□ 0.6
VPS33A-206ENST00000542310 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.83■□□□□ 0.6
VPS33A-206ENST00000542310 FRMPD3Q5JV73 1810 aa18.83■□□□□ 0.6
VPS33A-206ENST00000542310 CCNA1P78396 465 aa18.82■□□□□ 0.6
VPS33A-206ENST00000542310 PAGR1Q9BTK6 254 aa18.82■□□□□ 0.6
VPS33A-206ENST00000542310 ALPK3Q96L96 1907 aa18.82■□□□□ 0.6
VPS33A-206ENST00000542310 CEP290O15078 2479 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 RPTORQ8N122 1335 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 MPHOSPH10O00566 681 aaKnown RBP18.81■□□□□ 0.6
VPS33A-206ENST00000542310 PRKAB2O43741 272 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 CYP2D6P10635 497 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 EVX2Q03828 476 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 C12orf60Q5U649 245 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 POTEEQ6S8J3 1075 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 GPR142Q7Z601 462 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 CCAR1Q8IX12 1150 aaKnown RBP18.81■□□□□ 0.6
VPS33A-206ENST00000542310 KBTBD3Q8NAB2 608 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 ANKLE1Q8NAG6 615 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 TRIB2Q92519 343 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 USP6NLQ92738 828 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 CCDC17Q96LX7 622 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 DEFB118Q96PH6 123 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 APBA2Q99767 749 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 PORCNQ9H237 461 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 RPAP3Q9H6T3 665 aaPredicted RBP18.81■□□□□ 0.6
VPS33A-206ENST00000542310 SH2D4AQ9H788 454 aa18.81■□□□□ 0.6
VPS33A-206ENST00000542310 ARPP21Q9UBL0 812 aaPredicted RBP18.81■□□□□ 0.6
VPS33A-206ENST00000542310 SPDYE16A6NNV3 312 aaPredicted RBP18.8■□□□□ 0.6
VPS33A-206ENST00000542310 CNMDO75829 334 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 RGS2P41220 211 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 Q3C1V9 767 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 SLFNL1Q499Z3 407 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 MORN1Q5T089 497 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 MAP3K21Q5TCX8 1036 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 C16orf86Q6ZW13 317 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 PLEKHH3Q7Z736 793 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 SLC44A5Q8NCS7 719 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 LPAR1Q92633 364 aa18.8■□□□□ 0.6
VPS33A-206ENST00000542310 HMX1Q9NP08 348 aaPredicted RBP18.8■□□□□ 0.6
VPS33A-206ENST00000542310 TTC41PQ6P2S7 1318 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 A0A1W2PRG0 241 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 GLRX3O76003 335 aaKnown RBP18.79■□□□□ 0.6
VPS33A-206ENST00000542310 ZFYP08048 801 aaPredicted RBP18.79■□□□□ 0.6
VPS33A-206ENST00000542310 ICA1Q05084 483 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 HABP4Q5JVS0 413 aaKnown RBP18.79■□□□□ 0.6
VPS33A-206ENST00000542310 DYNLL2Q96FJ2 89 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 PUS7LQ9H0K6 701 aaKnown RBP18.79■□□□□ 0.6
VPS33A-206ENST00000542310 ARHGEF10LQ9HCE6 1279 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 SLC4A4Q9Y6R1 1079 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 ROBO3Q96MS0 1386 aa18.79■□□□□ 0.6
VPS33A-206ENST00000542310 USP17L12C9JPN9 530 aa18.78■□□□□ 0.6
VPS33A-206ENST00000542310 USP17L21D6R901 530 aa18.78■□□□□ 0.6
VPS33A-206ENST00000542310 PEX10O60683 326 aa18.78■□□□□ 0.6
VPS33A-206ENST00000542310 TFRCP02786 760 aaKnown RBP18.78■□□□□ 0.6
VPS33A-206ENST00000542310 ZKSCAN1P17029 563 aaPredicted RBP18.78■□□□□ 0.6
VPS33A-206ENST00000542310 CYP2B6P20813 491 aa18.78■□□□□ 0.6
VPS33A-206ENST00000542310 RRP1P56182 461 aaKnown RBP18.78■□□□□ 0.6
VPS33A-206ENST00000542310 LRRFIP1Q32MZ4 808 aaKnown RBP18.78■□□□□ 0.6
VPS33A-206ENST00000542310 GIMAP6Q6P9H5 292 aa18.78■□□□□ 0.6
VPS33A-206ENST00000542310 APPBP2Q92624 585 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms