RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 SMC5Q8IY18 1101 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 SPATA5Q8NB90 893 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 SH3RF3Q8TEJ3 882 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ZNF384Q8TF68 577 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 NSUN4Q96CB9 384 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ZNF512BQ96KM6 892 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 DBNDD2Q9BQY9 259 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 CCDC8Q9H0W5 538 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 AATFQ9NY61 560 aaKnown RBP eCLIP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 HMG20BQ9P0W2 317 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 LRP2BPQ9P2M1 347 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 PI4KBQ9UBF8 816 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 DBNLQ9UJU6 430 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 LTBP2Q14767 1821 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 FOCADQ5VW36 1801 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 COL2A1P02458 1487 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 MYO5AQ9Y4I1 1855 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 C19orf81C9J6K1 198 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 POTEB2H3BUK9 544 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 MYCNP04198 464 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 IFIT2P09913 472 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 HOXA7P31268 230 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 ZYXQ15942 572 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 SHROOM1Q2M3G4 852 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 ERICH6BQ5W0A0 696 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 MAPKAPK5Q8IW41 473 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 TGFBRAP1Q8WUH2 860 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 EDC3Q96F86 508 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 APBA2Q99767 749 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 WDR18Q9BV38 432 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 RBPJLQ9UBG7 517 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 LAMA3Q16787 3333 aa10.55□□□□□ -0.72
CLSTN3-212ENST00000541770 MYH1P12882 1939 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 BAG3O95817 575 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 MAP4K4O95819 1239 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 JAG1P78504 1218 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 MAP2K5Q13163 448 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 MORN1Q5T089 497 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 MFSD14CQ5VZR4 134 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 FAM109BQ6ICB4 259 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 FEZ1Q99689 392 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 DHX36Q9H2U1 1008 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 PRDM5Q9NQX1 630 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 TLR7Q9NYK1 1049 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 SAP30BPQ9UHR5 308 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 ATP11BQ9Y2G3 1177 aa10.54□□□□□ -0.72
CLSTN3-212ENST00000541770 SMARCA5O60264 1052 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 GLRX3O76003 335 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 RTP1P59025 263 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 CCNA1P78396 465 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 ATP2B2Q01814 1243 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 TTC39AQ5SRH9 613 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 ANKRD45Q5TZF3 282 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 NAA16Q6N069 864 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 USP17L2Q6R6M4 530 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 MAFAQ8NHW3 353 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 GTF3C2Q8WUA4 911 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 USP6NLQ92738 828 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 CDX2Q99626 313 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 SNRKQ9NRH2 765 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 FLRT1Q9NZU1 646 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 ZBTB47Q9UFB7 747 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 DDX20Q9UHI6 824 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 PALD1Q9ULE6 856 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 ZBTB21Q9ULJ3 1066 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 IVNS1ABPQ9Y6Y0 642 aa10.53□□□□□ -0.72
CLSTN3-212ENST00000541770 RLFQ13129 1914 aa10.52□□□□□ -0.72
CLSTN3-212ENST00000541770 IGSF3O75054 1194 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 HLA-DOAP06340 250 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 PLCG2P16885 1265 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 MCAMP43121 646 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 NUCB1Q02818 461 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 SHHQ15465 462 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 GJC2Q5T442 439 aaPredicted RBP10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 ANO1Q5XXA6 986 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 FOXP4Q8IVH2 680 aaPredicted RBP10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 MYLIPQ8WY64 445 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 LPAR1Q92633 364 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 DNAJC18Q9H819 358 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 EMILIN3Q9NT22 766 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 FLT1P17948 1338 aa10.52□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L15C9J2P7 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L13C9JLJ4 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L11C9JVI0 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L18D6R9N7 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L22D6RA61 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L17D6RBQ6 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L19D6RCP7 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L20D6RJB6 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 MSCO60682 206 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 GH2P01242 217 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 ATP5JP18859 108 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 PTPREP23469 700 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 CYP2C19P33261 490 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 USP17L24Q0WX57 530 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 RAB3GAP1Q15042 981 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 C9orf50Q5SZB4 431 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 CHD1LQ86WJ1 897 aa10.51□□□□□ -0.73
CLSTN3-212ENST00000541770 NPLOC4Q8TAT6 608 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms