RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ASCC2Q9H1I8 757 aaPredicted RBP17.04■□□□□ 0.32
USP28-209ENST00000540925 PNMA3Q9UL41 463 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 GREB1LQ9C091 1923 aaPredicted RBP17.04■□□□□ 0.32
USP28-209ENST00000540925 PABPC4Q13310 644 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP28-209ENST00000540925 RAB3GAP1Q15042 981 aa17.03■□□□□ 0.32
USP28-209ENST00000540925 USP17L2Q6R6M4 530 aa17.03■□□□□ 0.32
USP28-209ENST00000540925 SIAH1Q8IUQ4 282 aa17.03■□□□□ 0.32
USP28-209ENST00000540925 MYH8P13535 1937 aa17.03■□□□□ 0.32
USP28-209ENST00000540925 MGAMO43451 1857 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 A0A1W2PRG0 241 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 PATL2C9JE40 543 aaKnown RBP17.02■□□□□ 0.32
USP28-209ENST00000540925 AKR1B1P15121 316 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 PSMC4P43686 418 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.32
USP28-209ENST00000540925 KIF22Q14807 665 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 FAM110CQ1W6H9 321 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 POTEEQ6S8J3 1075 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 TMEM179Q6ZVK1 233 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 SMCR8Q8TEV9 937 aaPredicted RBP17.02■□□□□ 0.32
USP28-209ENST00000540925 DDRGK1Q96HY6 314 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 CABP5Q9NP86 173 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 TMOD4Q9NZQ9 345 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 SRRDQ9UH36 339 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 PTCH2Q9Y6C5 1203 aa17.02■□□□□ 0.32
USP28-209ENST00000540925 OSBPP22059 807 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 GCLCP48506 637 aaPredicted RBP17.01■□□□□ 0.31
USP28-209ENST00000540925 USP14P54578 494 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 PRMT2P55345 433 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 AMOTL1Q8IY63 956 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 IFNL3Q8IZI9 196 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 CCDC17Q96LX7 622 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.01■□□□□ 0.31
USP28-209ENST00000540925 MORF4L1Q9UBU8 362 aa17.01■□□□□ 0.31
USP28-209ENST00000540925 ANKRD13CQ8N6S4 541 aa17■□□□□ 0.31
USP28-209ENST00000540925 P2RX7Q99572 595 aaKnown RBP17■□□□□ 0.31
USP28-209ENST00000540925 VCAM1P19320 739 aa16.99■□□□□ 0.31
USP28-209ENST00000540925 RASA1P20936 1047 aa16.99■□□□□ 0.31
USP28-209ENST00000540925 HERVK_113P62684 666 aa16.99■□□□□ 0.31
USP28-209ENST00000540925 ZNF333Q96JL9 665 aa16.99■□□□□ 0.31
USP28-209ENST00000540925 HELLSQ9NRZ9 838 aa16.99■□□□□ 0.31
USP28-209ENST00000540925 RBBP6Q7Z6E9 1792 aaKnown RBP16.99■□□□□ 0.31
USP28-209ENST00000540925 A0A0D9SFI3 127 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 MPHOSPH10O00566 681 aaKnown RBP16.98■□□□□ 0.31
USP28-209ENST00000540925 PDE4AP27815 886 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 FCGRTP55899 365 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 IRX3P78415 501 aaPredicted RBP16.98■□□□□ 0.31
USP28-209ENST00000540925 KIAA1755Q5JYT7 1200 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 LBX2Q6XYB7 198 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 CATSPERGQ6ZRH7 1159 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 CCDC129Q6ZRS4 1044 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 CLEC10AQ8IUN9 316 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 FAM227BQ96M60 508 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 FEZ1Q99689 392 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 TXNRD2Q9NNW7 524 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 RBPJLQ9UBG7 517 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 RLFQ13129 1914 aa16.98■□□□□ 0.31
USP28-209ENST00000540925 USP17L15C9J2P7 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L13C9JLJ4 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L11C9JVI0 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L18D6R9N7 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L22D6RA61 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L17D6RBQ6 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L19D6RCP7 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L20D6RJB6 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 FMNL1O95466 1100 aaPredicted RBP16.97■□□□□ 0.31
USP28-209ENST00000540925 SOX10P56693 466 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 PRKCZQ05513 592 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 USP17L24Q0WX57 530 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 ZYXQ15942 572 aaKnown RBP16.97■□□□□ 0.31
USP28-209ENST00000540925 GABRQQ9UN88 632 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 TMX2Q9Y320 296 aa16.97■□□□□ 0.31
USP28-209ENST00000540925 MYPNQ86TC9 1320 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 IGKV6D-41A0A0C4DH26 115 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 MINDY4BA8MYZ0 360 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 PEX10O60683 326 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 CNMDO75829 334 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 HOXD10P28358 340 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 TDO2P48775 406 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 ICA1Q05084 483 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 ALX1Q15699 326 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 VPS53Q5VIR6 699 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 GTF3C2Q8WUA4 911 aaPredicted RBP16.96■□□□□ 0.31
USP28-209ENST00000540925 NACAP1Q9BZK3 213 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 KANSL2Q9H9L4 492 aa16.96■□□□□ 0.31
USP28-209ENST00000540925 DOCK3Q8IZD9 2030 aa16.96■□□□□ 0.3
USP28-209ENST00000540925 PLIN4Q96Q06 1357 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 ECM2O94769 699 aaPredicted RBP16.95■□□□□ 0.3
USP28-209ENST00000540925 APPP05067 770 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 NMIQ13287 307 aaPredicted RBP16.95■□□□□ 0.3
USP28-209ENST00000540925 SLC9C1Q4G0N8 1177 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 MCMDC2Q4G0Z9 681 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 ZNF589Q86UQ0 364 aaPredicted RBP16.95■□□□□ 0.3
USP28-209ENST00000540925 LPAR1Q92633 364 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 RPAP3Q9H6T3 665 aaPredicted RBP16.95■□□□□ 0.3
USP28-209ENST00000540925 VCPKMTQ9H867 229 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 PLXNB2O15031 1838 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 A0A0G2JMZ2 1700 aa16.95■□□□□ 0.3
USP28-209ENST00000540925 TNPO2O14787 897 aaKnown RBP16.94■□□□□ 0.3
USP28-209ENST00000540925 EEF2P13639 858 aaKnown RBP16.94■□□□□ 0.3
USP28-209ENST00000540925 SDSP20132 328 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms