RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 ERO1AQ96HE7 468 aa21.86■■□□□ 1.09
SNRPA1-203ENST00000540017 ABHD8Q96I13 439 aa21.86■■□□□ 1.09
SNRPA1-203ENST00000540017 NACAP1Q9BZK3 213 aa21.86■■□□□ 1.09
SNRPA1-203ENST00000540017 NAPBQ9H115 298 aa21.86■■□□□ 1.09
SNRPA1-203ENST00000540017 ZSWIM8A7E2V4 1837 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 BCRP11274 1271 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 RASA1P20936 1047 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 CCDC17Q96LX7 622 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 ARHGAP39Q9C0H5 1083 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 KIAA1683Q9H0B3 1180 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 TMOD4Q9NZQ9 345 aa21.85■■□□□ 1.09
SNRPA1-203ENST00000540017 IFFO2Q5TF58 517 aa21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 USP17L2Q6R6M4 530 aa21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 OTOP1Q7RTM1 612 aa21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 ASCC2Q9H1I8 757 aaPredicted RBP21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 TRIM17Q9Y577 477 aa21.84■■□□□ 1.09
SNRPA1-203ENST00000540017 CCDC171Q6TFL3 1326 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 HTTP42858 3142 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 PRDM1O75626 825 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 ECM2O94769 699 aaPredicted RBP21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 CTGFP29279 349 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 LACTBP83111 547 aaPredicted RBP21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 PPARAQ07869 468 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 CWC27Q6UX04 472 aaKnown RBP21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 CENPQQ7L2Z9 268 aaPredicted RBP21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 C12orf42Q96LP6 360 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 FEZ1Q99689 392 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 TACC3Q9Y6A5 838 aa21.83■■□□□ 1.09
SNRPA1-203ENST00000540017 HSPD1P10809 573 aaKnown RBP21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 HOXA7P31268 230 aaPredicted RBP21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 ALX1Q15699 326 aa21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 IL25Q9H293 177 aa21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 MKNK2Q9HBH9 465 aa21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 INCENPQ9NQS7 918 aa21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 DIAPH3Q9NSV4 1193 aa21.82■■□□□ 1.08
SNRPA1-203ENST00000540017 GREB1LQ9C091 1923 aaPredicted RBP21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 FGAP02671 866 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 ICA1Q05084 483 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 CTDSPL2Q05D32 466 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 KIAA1755Q5JYT7 1200 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 SMCR8Q8TEV9 937 aaPredicted RBP21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 EFCC1Q9HA90 598 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 PNMA3Q9UL41 463 aa21.81■■□□□ 1.08
SNRPA1-203ENST00000540017 CAPN15O75808 1086 aa21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 VCAM1P19320 739 aa21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 OSBPP22059 807 aa21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 USP14P54578 494 aa21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 PABPC4Q13310 644 aaKnown RBP eCLIP21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 PKN2Q16513 984 aaKnown RBP21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 POTEEQ6S8J3 1075 aa21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 P2RX7Q99572 595 aaKnown RBP21.8■■□□□ 1.08
SNRPA1-203ENST00000540017 HIP1O00291 1037 aa21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 PEX10O60683 326 aa21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 EEF2P13639 858 aaKnown RBP21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 FBXO46Q6PJ61 603 aaPredicted RBP21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 ANKRD13CQ8N6S4 541 aa21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 TRIM47Q96LD4 638 aa21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 KANSL2Q9H9L4 492 aa21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.79■■□□□ 1.08
SNRPA1-203ENST00000540017 PSMC4P43686 418 aa21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 IRX3P78415 501 aaPredicted RBP21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 ANAPC4Q9UJX5 808 aa21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 HPS5Q9UPZ3 1129 aa21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 PTPN22Q9Y2R2 807 aa21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 TMX2Q9Y320 296 aa21.78■■□□□ 1.08
SNRPA1-203ENST00000540017 IGKV6D-41A0A0C4DH26 115 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 HERVK_113P62684 666 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 KIF22Q14807 665 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 CATSPERGQ6ZRH7 1159 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 ZNF444Q8N0Y2 327 aaPredicted RBP21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 CCDC136Q96JN2 1154 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 ARHGEF10LQ9HCE6 1279 aa21.77■■□□□ 1.08
SNRPA1-203ENST00000540017 USP17L15C9J2P7 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L13C9JLJ4 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L11C9JVI0 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L18D6R9N7 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L22D6RA61 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L17D6RBQ6 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L19D6RCP7 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L20D6RJB6 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 NEFLP07196 543 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 CHMLP26374 656 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 GCLCP48506 637 aaPredicted RBP21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 MFAP1P55081 439 aaKnown RBP21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 ATP2B2Q01814 1243 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 PDE4BQ07343 736 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 USP17L24Q0WX57 530 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 FAM47AQ5JRC9 791 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 NBPF3Q9H094 633 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 RPAP3Q9H6T3 665 aaPredicted RBP21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 ZNF287Q9HBT7 754 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 TXNRD2Q9NNW7 524 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 ZMYM6O95789 1325 aa21.76■■□□□ 1.07
SNRPA1-203ENST00000540017 CENPBP07199 599 aaPredicted RBP21.75■■□□□ 1.07
SNRPA1-203ENST00000540017 SLC3A2P08195 630 aaKnown RBP21.75■■□□□ 1.07
SNRPA1-203ENST00000540017 HAND2P61296 217 aa21.75■■□□□ 1.07
SNRPA1-203ENST00000540017 FAM110CQ1W6H9 321 aa21.75■■□□□ 1.07
SNRPA1-203ENST00000540017 SPICE1Q8N0Z3 855 aa21.75■■□□□ 1.07
SNRPA1-203ENST00000540017 VCPKMTQ9H867 229 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms