RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 PDCL3Q9H2J4 239 aa19.61■□□□□ 0.73
COPS3-212ENST00000539941 KAT14Q9H8E8 782 aa19.61■□□□□ 0.73
COPS3-212ENST00000539941 MYH8P13535 1937 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 CXCL9Q07325 125 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 CIAPIN1Q6FI81 312 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 CRACR2BQ8N4Y2 399 aaPredicted RBP19.6■□□□□ 0.73
COPS3-212ENST00000539941 MTMR14Q8NCE2 650 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 CTCFLQ8NI51 663 aaPredicted RBP19.6■□□□□ 0.73
COPS3-212ENST00000539941 PHKBQ93100 1093 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 ALG1Q9BT22 464 aa19.6■□□□□ 0.73
COPS3-212ENST00000539941 RNF26Q9BY78 433 aaPredicted RBP19.6■□□□□ 0.73
COPS3-212ENST00000539941 DDX49Q9Y6V7 483 aaKnown RBP19.6■□□□□ 0.73
COPS3-212ENST00000539941 MBD3O95983 291 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 KIF5BP33176 963 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 DNM1Q05193 864 aaKnown RBP19.59■□□□□ 0.73
COPS3-212ENST00000539941 TNIP1Q15025 636 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 FOXD4L6Q3SYB3 417 aaPredicted RBP19.59■□□□□ 0.73
COPS3-212ENST00000539941 ATL3Q6DD88 541 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 FOXD4L3Q6VB84 417 aaPredicted RBP19.59■□□□□ 0.73
COPS3-212ENST00000539941 NBPF11Q86T75 865 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 SLC26A6Q9BXS9 759 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 TMOD2Q9NZR1 351 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 FAM198AQ9UFP1 575 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 CNPY2Q9Y2B0 182 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 PCDHAC2Q9Y5I4 1007 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 ATRNL1Q5VV63 1379 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 SPDYE2BA6NHP3 402 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 PPFIA3O75145 1194 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 DEXIO95424 95 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 SPDYE6P0CI01 402 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 NOVP48745 357 aa19.59■□□□□ 0.73
COPS3-212ENST00000539941 ZNF526Q8TF50 670 aaPredicted RBP19.59■□□□□ 0.73
COPS3-212ENST00000539941 PRMT6Q96LA8 375 aaPredicted RBP19.59■□□□□ 0.73
COPS3-212ENST00000539941 NCLP19338 710 aaKnown RBP19.58■□□□□ 0.72
COPS3-212ENST00000539941 MRE11P49959 708 aa19.58■□□□□ 0.72
COPS3-212ENST00000539941 DLGAP5Q15398 846 aa19.58■□□□□ 0.72
COPS3-212ENST00000539941 USP48Q86UV5 1035 aa19.58■□□□□ 0.72
COPS3-212ENST00000539941 PNMA1Q8ND90 353 aa19.58■□□□□ 0.72
COPS3-212ENST00000539941 SCAND2PQ9GZW5 306 aaPredicted RBP19.58■□□□□ 0.72
COPS3-212ENST00000539941 TDRD3Q9H7E2 651 aaKnown RBP19.58■□□□□ 0.72
COPS3-212ENST00000539941 GPBP1L1Q9HC44 474 aaPredicted RBP19.58■□□□□ 0.72
COPS3-212ENST00000539941 PI4KBQ9UBF8 816 aa19.58■□□□□ 0.72
COPS3-212ENST00000539941 MYH15Q9Y2K3 1946 aa19.57■□□□□ 0.72
COPS3-212ENST00000539941 RPS12P25398 132 aaKnown RBP19.57■□□□□ 0.72
COPS3-212ENST00000539941 PPP4R3BQ5MIZ7 849 aa19.57■□□□□ 0.72
COPS3-212ENST00000539941 C9orf131Q5VYM1 1079 aa19.57■□□□□ 0.72
COPS3-212ENST00000539941 TMTC3Q6ZXV5 915 aa19.57■□□□□ 0.72
COPS3-212ENST00000539941 CCDC17Q96LX7 622 aa19.57■□□□□ 0.72
COPS3-212ENST00000539941 ELP1O95163 1332 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 PRPF3O43395 683 aaKnown RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 FOSBP53539 338 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 AKAP17AQ02040 695 aaKnown RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 FUT2Q10981 343 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 TRIM29Q14134 588 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 FKBP1CQ5VVH2 108 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 BRAPQ7Z569 592 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 FOXP4Q8IVH2 680 aaPredicted RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 CFAP45Q9UL16 551 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 SIPA1L1O43166 1804 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 FIBPO43427 364 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 TOP1P11387 765 aaKnown RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 SHMT1P34896 483 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 GNAQP50148 359 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 CACNB3P54284 484 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 GUCY1B3Q02153 619 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 METTL16Q86W50 562 aaKnown RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 ZNF396Q96N95 335 aaPredicted RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 TMEM47Q9BQJ4 181 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 RBM27Q9P2N5 1060 aaKnown RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 STX8Q9UNK0 236 aa19.56■□□□□ 0.72
COPS3-212ENST00000539941 ZBTB12Q9Y330 459 aaPredicted RBP19.56■□□□□ 0.72
COPS3-212ENST00000539941 MYH6P13533 1939 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 IGKV6D-41A0A0C4DH26 115 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 TCP10Q12799 353 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 GRM4Q14833 912 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 SPDYE2Q495Y8 402 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 ZFPM1Q8IX07 1006 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 GDPD2Q9HCC8 539 aa19.55■□□□□ 0.72
COPS3-212ENST00000539941 GREB1LQ9C091 1923 aaPredicted RBP19.55■□□□□ 0.72
COPS3-212ENST00000539941 PRELPP51888 382 aa19.54■□□□□ 0.72
COPS3-212ENST00000539941 UBE2HP62256 183 aa19.54■□□□□ 0.72
COPS3-212ENST00000539941 KRT40Q6A162 431 aa19.54■□□□□ 0.72
COPS3-212ENST00000539941 ZSCAN29Q8IWY8 852 aaPredicted RBP19.54■□□□□ 0.72
COPS3-212ENST00000539941 CEP95Q96GE4 821 aa19.54■□□□□ 0.72
COPS3-212ENST00000539941 ZBED3Q96IU2 234 aaPredicted RBP19.54■□□□□ 0.72
COPS3-212ENST00000539941 DDTLA6NHG4 134 aaPredicted RBP19.53■□□□□ 0.72
COPS3-212ENST00000539941 PLEKHA8P1O95397 391 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 KIF23Q02241 960 aaPredicted RBP19.53■□□□□ 0.72
COPS3-212ENST00000539941 FAM173BQ6P4H8 233 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 SH3BP5LQ7L8J4 393 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 GPT2Q8TD30 523 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 AIFM3Q96NN9 605 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 MAP7D2Q96T17 732 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 LZTS2Q9BRK4 669 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.53■□□□□ 0.72
COPS3-212ENST00000539941 TRIM34Q9BYJ4 488 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 MTMR4Q9NYA4 1195 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 ZNF70Q9UC06 446 aaPredicted RBP19.53■□□□□ 0.72
COPS3-212ENST00000539941 CNTNAP5Q8WYK1 1306 aa19.53■□□□□ 0.72
COPS3-212ENST00000539941 FZD9O00144 591 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms