RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.05□□□□□ -1.12
USP28-202ENST00000535607 ATP7BP35670 1465 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 USP32Q8NFA0 1604 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 IGHDP01880 384 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 RAC1P63000 192 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 C20orf204Q6ZNR8 217 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 KIAA1211Q6ZU35 1233 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 SKAP1Q86WV1 359 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 MAP4K3Q8IVH8 894 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 SMAP1Q8IYB5 467 aaPredicted RBP8.04□□□□□ -1.12
USP28-202ENST00000535607 C3orf58Q8NDZ4 430 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 PPP1R9BQ96SB3 815 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 CCSER2Q9H7U1 834 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 SRA1Q9HD15 236 aaKnown RBP8.04□□□□□ -1.12
USP28-202ENST00000535607 PRDM6Q9NQX0 595 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 STRCP1A6NGW2 1772 aa8.04□□□□□ -1.12
USP28-202ENST00000535607 LINC01387J3KSC0 135 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 DYNC1I1O14576 645 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 EPHA1P21709 976 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 NASPP49321 788 aaPredicted RBP8.03□□□□□ -1.12
USP28-202ENST00000535607 ZNF157P51786 506 aaPredicted RBP8.03□□□□□ -1.12
USP28-202ENST00000535607 PIP4K2BP78356 416 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 WDR63Q8IWG1 891 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 WNT8BQ93098 351 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 STK26Q9P289 416 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 MKL2Q9ULH7 1088 aa8.03□□□□□ -1.12
USP28-202ENST00000535607 FANCCQ00597 558 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 INSM1Q01101 510 aaPredicted RBP8.02□□□□□ -1.13
USP28-202ENST00000535607 GSTM4Q03013 218 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 C19orf57Q0VDD7 668 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 MAP3K11Q16584 847 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 ZNF385CQ66K41 422 aaPredicted RBP8.02□□□□□ -1.13
USP28-202ENST00000535607 TXNDC11Q6PKC3 985 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 C8orf86Q6ZUL3 223 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 NT5DC4Q86YG4 428 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 DMRTC2Q8IXT2 367 aaPredicted RBP8.02□□□□□ -1.13
USP28-202ENST00000535607 SMC5Q8IY18 1101 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 ANKRD24Q8TF21 1146 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 EMILIN2Q9BXX0 1053 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 PANK2Q9BZ23 570 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 CBX8Q9HC52 389 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 SEC31BQ9NQW1 1179 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 KIF1AQ12756 1690 aa8.02□□□□□ -1.13
USP28-202ENST00000535607 APAF1O14727 1248 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 BCAR3O75815 825 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 B3GALT4O96024 378 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 CYP11A1P05108 521 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 ESRRAP11474 423 aaPredicted RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 HDLBPQ00341 1268 aaKnown RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 AP3B2Q13367 1082 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 GNL2Q13823 731 aaKnown RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 LRRC14Q15048 493 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 HP1BP3Q5SSJ5 553 aaPredicted RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 C9orf131Q5VYM1 1079 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 VN1R5Q7Z5H4 357 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 USP48Q86UV5 1035 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 FTSJ3Q8IY81 847 aaKnown RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 KLHL23Q8NBE8 558 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 WHAMMQ8TF30 809 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 CFAP53Q96M91 514 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 CORO1BQ9BR76 489 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 OSGEPQ9NPF4 335 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 NOP53Q9NZM5 478 aaKnown RBP8.01□□□□□ -1.13
USP28-202ENST00000535607 LRRC7Q96NW7 1537 aa8.01□□□□□ -1.13
USP28-202ENST00000535607 IQSEC2Q5JU85 1478 aa8□□□□□ -1.13
USP28-202ENST00000535607 POLR3AO14802 1390 aaPredicted RBP8□□□□□ -1.13
USP28-202ENST00000535607 ANKRD36BQ8N2N9 1353 aa8□□□□□ -1.13
USP28-202ENST00000535607 GNB5O14775 395 aa8□□□□□ -1.13
USP28-202ENST00000535607 GBP2P32456 591 aaPredicted RBP8□□□□□ -1.13
USP28-202ENST00000535607 NUCB2P80303 420 aa8□□□□□ -1.13
USP28-202ENST00000535607 HDAC1Q13547 482 aaPredicted RBP8□□□□□ -1.13
USP28-202ENST00000535607 RAB3GAP1Q15042 981 aa8□□□□□ -1.13
USP28-202ENST00000535607 KLHL40Q2TBA0 621 aa8□□□□□ -1.13
USP28-202ENST00000535607 PRRT3Q5FWE3 981 aa8□□□□□ -1.13
USP28-202ENST00000535607 ZKSCAN2Q63HK3 967 aa8□□□□□ -1.13
USP28-202ENST00000535607 ZSCAN1Q8NBB4 408 aa8□□□□□ -1.13
USP28-202ENST00000535607 RUNDC1Q96C34 613 aa8□□□□□ -1.13
USP28-202ENST00000535607 NECAB3Q96P71 396 aaPredicted RBP8□□□□□ -1.13
USP28-202ENST00000535607 SOX17Q9H6I2 414 aaPredicted RBP8□□□□□ -1.13
USP28-202ENST00000535607 CCDC39Q9UFE4 941 aa8□□□□□ -1.13
USP28-202ENST00000535607 DDX19BQ9UMR2 479 aa8□□□□□ -1.13
USP28-202ENST00000535607 XIRP1Q702N8 1843 aaKnown RBP8□□□□□ -1.13
USP28-202ENST00000535607 NRKQ7Z2Y5 1582 aa8□□□□□ -1.13
USP28-202ENST00000535607 MON2Q7Z3U7 1717 aa8□□□□□ -1.13
USP28-202ENST00000535607 LTBP4Q8N2S1 1624 aa8□□□□□ -1.13
USP28-202ENST00000535607 AKAP12Q02952 1782 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 MSH6P52701 1360 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 TMEM94Q12767 1356 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 FSCN2O14926 492 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 IPO8O15397 1037 aaKnown RBP7.99□□□□□ -1.13
USP28-202ENST00000535607 ZNF500O60304 480 aaPredicted RBP7.99□□□□□ -1.13
USP28-202ENST00000535607 DGKGP49619 791 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 TRIM28Q13263 835 aaKnown RBP7.99□□□□□ -1.13
USP28-202ENST00000535607 MVPQ14764 893 aaKnown RBP7.99□□□□□ -1.13
USP28-202ENST00000535607 GRIK5Q16478 980 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 UTP14CQ5TAP6 766 aaKnown RBP7.99□□□□□ -1.13
USP28-202ENST00000535607 TAF3Q5VWG9 929 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 TTBK2Q6IQ55 1244 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 CLEC17AQ6ZS10 378 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 WAPLQ7Z5K2 1190 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms