RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ANAPC4Q9UJX5 808 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 PTPRFP10586 1907 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 ZMYM6O95789 1325 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 CCDC171Q6TFL3 1326 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 HIP1O00291 1037 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 FGAP02671 866 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 PPARAQ07869 468 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 PARK7Q99497 189 aaKnown RBP15.49■□□□□ 0.07
VPS28-216ENST00000533806 MCOLN1Q9GZU1 580 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 NAPBQ9H115 298 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 IL25Q9H293 177 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 TACC3Q9Y6A5 838 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 LOC285556D6RIA3 1793 aa15.49■□□□□ 0.07
VPS28-216ENST00000533806 IGKV6D-41A0A0C4DH26 115 aa15.48■□□□□ 0.07
VPS28-216ENST00000533806 MPHOSPH10O00566 681 aaKnown RBP15.48■□□□□ 0.07
VPS28-216ENST00000533806 FGRP09769 529 aa15.48■□□□□ 0.07
VPS28-216ENST00000533806 USP17L2Q6R6M4 530 aa15.48■□□□□ 0.07
VPS28-216ENST00000533806 CWC27Q6UX04 472 aaKnown RBP15.48■□□□□ 0.07
VPS28-216ENST00000533806 ASCC2Q9H1I8 757 aaPredicted RBP15.48■□□□□ 0.07
VPS28-216ENST00000533806 CPA4Q9UI42 421 aa15.48■□□□□ 0.07
VPS28-216ENST00000533806 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.48■□□□□ 0.071e-7■■■■□ 24.2
VPS28-216ENST00000533806 CENPBP07199 599 aaPredicted RBP15.47■□□□□ 0.07
VPS28-216ENST00000533806 CHMLP26374 656 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 USP14P54578 494 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 LACTBP83111 547 aaPredicted RBP15.47■□□□□ 0.07
VPS28-216ENST00000533806 PKN2Q16513 984 aaKnown RBP15.47■□□□□ 0.07
VPS28-216ENST00000533806 POTEEQ6S8J3 1075 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 SKAP1Q86WV1 359 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 CLEC10AQ8IUN9 316 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 CD99L2Q8TCZ2 262 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 ERO1AQ96HE7 468 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 KANSL2Q9H9L4 492 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 DIAPH3Q9NSV4 1193 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 TMOD4Q9NZQ9 345 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 TMX2Q9Y320 296 aa15.47■□□□□ 0.07
VPS28-216ENST00000533806 PRDM1O75626 825 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 CTGFP29279 349 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 MFAP1P55081 439 aaKnown RBP15.46■□□□□ 0.07
VPS28-216ENST00000533806 PABPC4Q13310 644 aaKnown RBP eCLIP15.46■□□□□ 0.078e-10■■□□□ 13.9
VPS28-216ENST00000533806 KIAA1755Q5JYT7 1200 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 OTOP1Q7RTM1 612 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 CCDC136Q96JN2 1154 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 MKNK2Q9HBH9 465 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 ZNF287Q9HBT7 754 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 PNMA3Q9UL41 463 aa15.46■□□□□ 0.07
VPS28-216ENST00000533806 VCAM1P19320 739 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 ICA1Q05084 483 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 CTDSPL2Q05D32 466 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 ERICH6BQ5W0A0 696 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 STK11IPQ8N1F8 1099 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 P2RX7Q99572 595 aaKnown RBP15.45■□□□□ 0.06
VPS28-216ENST00000533806 ARHGAP39Q9C0H5 1083 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 NBPF3Q9H094 633 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 INCENPQ9NQS7 918 aa15.45■□□□□ 0.06
VPS28-216ENST00000533806 EEF2P13639 858 aaKnown RBP15.44■□□□□ 0.06
VPS28-216ENST00000533806 OSBPP22059 807 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 GCLCP48506 637 aaPredicted RBP15.44■□□□□ 0.06
VPS28-216ENST00000533806 PDE4BQ07343 736 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 ZYXQ15942 572 aaKnown RBP15.44■□□□□ 0.06
VPS28-216ENST00000533806 CATSPERGQ6ZRH7 1159 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 ZNF444Q8N0Y2 327 aaPredicted RBP15.44■□□□□ 0.06
VPS28-216ENST00000533806 NEDD1Q8NHV4 660 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 MKL1Q969V6 931 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 ABHD8Q96I13 439 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 FEZ1Q99689 392 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 DSCC1Q9BVC3 393 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 NYAP2Q9P242 653 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 MORF4L1Q9UBU8 362 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 PLIN4Q96Q06 1357 aa15.44■□□□□ 0.06
VPS28-216ENST00000533806 GREB1LQ9C091 1923 aaPredicted RBP15.44■□□□□ 0.06
VPS28-216ENST00000533806 USP17L15C9J2P7 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L13C9JLJ4 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L11C9JVI0 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L18D6R9N7 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L22D6RA61 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L17D6RBQ6 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L19D6RCP7 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L20D6RJB6 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 ORC4O43929 436 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 NEFLP07196 543 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 SLC3A2P08195 630 aaKnown RBP15.43■□□□□ 0.06
VPS28-216ENST00000533806 NOVP48745 357 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 HERVK_113P62684 666 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 USP17L24Q0WX57 530 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 FAM110CQ1W6H9 321 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 IFFO2Q5TF58 517 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 LBX2Q6XYB7 198 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 SMCR8Q8TEV9 937 aaPredicted RBP15.43■□□□□ 0.06
VPS28-216ENST00000533806 TRIM47Q96LD4 638 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 VCPKMTQ9H867 229 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 EFCC1Q9HA90 598 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 ARHGEF10LQ9HCE6 1279 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 MTMR4Q9NYA4 1195 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 RBPJLQ9UBG7 517 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 TRIM17Q9Y577 477 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 RAD50Q92878 1312 aa15.43■□□□□ 0.06
VPS28-216ENST00000533806 SGSM2O43147 1006 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 GNRH1P01148 92 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 BMP2KLQ5H9B9 411 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 FBXO46Q6PJ61 603 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms