RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 SMIM22K7EJ46 135 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 ERC2O15083 957 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 HOXA7P31268 230 aaPredicted RBP12.55□□□□□ -0.4
CAPN1-225ENST00000533704 USP14P54578 494 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 UBXN2AP68543 259 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 ANKRD45Q5TZF3 282 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 CCAR1Q8IX12 1150 aaKnown RBP12.55□□□□□ -0.4
CAPN1-225ENST00000533704 STK11IPQ8N1F8 1099 aa12.55□□□□□ -0.4
CAPN1-225ENST00000533704 CENPFP49454 3210 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 RNF113AO15541 343 aaKnown RBP12.54□□□□□ -0.4
CAPN1-225ENST00000533704 CCL5P13501 91 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 AKR1B1P15121 316 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 GUCY1A2P33402 732 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 C12orf60Q5U649 245 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 CLEC10AQ8IUN9 316 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 GPRC5AQ8NFJ5 357 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 FSD1Q9BTV5 496 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 KIAA1683Q9H0B3 1180 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 RNF208Q9H0X6 261 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 CWC22Q9HCG8 908 aaKnown RBP12.54□□□□□ -0.4
CAPN1-225ENST00000533704 SWAP70Q9UH65 585 aa12.54□□□□□ -0.4
CAPN1-225ENST00000533704 MYH4Q9Y623 1939 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 MINDY4BA8MYZ0 360 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L15C9J2P7 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L13C9JLJ4 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L11C9JVI0 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L18D6R9N7 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L22D6RA61 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L17D6RBQ6 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L19D6RCP7 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L20D6RJB6 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 INHAP05111 366 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 VCAM1P19320 739 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 MX1P20591 662 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 CDK8P49336 464 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 ATP2B2Q01814 1243 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 USP17L24Q0WX57 530 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 TMEM179Q6ZVK1 233 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 APPBP2Q92624 585 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 OSBP2Q969R2 916 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 STRBPQ96SI9 672 aaKnown RBP12.53□□□□□ -0.4
CAPN1-225ENST00000533704 UNC93B1Q9H1C4 597 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 TXNRD2Q9NNW7 524 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 MORF4L1Q9UBU8 362 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 TTC41PQ6P2S7 1318 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 CEP290O15078 2479 aa12.53□□□□□ -0.4
CAPN1-225ENST00000533704 M0R2C6 588 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 GPAA1O43292 621 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 GLRX3O76003 335 aaKnown RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 APPP05067 770 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 ZFYP08048 801 aaPredicted RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 CYP2B6P20813 491 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 ERVK-9P63128 1117 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 ERVK-24P63145 666 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 LRRFIP1Q32MZ4 808 aaKnown RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 WDR78Q5VTH9 848 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 PRPF38BQ5VTL8 546 aaKnown RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 CTR9Q6PD62 1173 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 PI4K2BQ8TCG2 481 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 C12orf42Q96LP6 360 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 TANGO6Q9C0B7 1094 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 RPAP3Q9H6T3 665 aaPredicted RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 RBPJLQ9UBG7 517 aa12.52□□□□□ -0.41
CAPN1-225ENST00000533704 ARPP21Q9UBL0 812 aaPredicted RBP12.52□□□□□ -0.41
CAPN1-225ENST00000533704 COL11A1P12107 1806 aaPredicted RBP12.51□□□□□ -0.41
CAPN1-225ENST00000533704 PARP14Q460N5 1801 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 A0A1W2PRG0 241 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 RAD21O60216 631 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 TDO2P48775 406 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 ICA1Q05084 483 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 IRF5Q13568 498 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 Q3C1V9 767 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 CATSPERGQ6ZRH7 1159 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 C16orf86Q6ZW13 317 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 PXYLP1Q8TE99 480 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 GTF3C2Q8WUA4 911 aaPredicted RBP12.51□□□□□ -0.41
CAPN1-225ENST00000533704 PORCNQ9H237 461 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 ARHGEF10LQ9HCE6 1279 aa12.51□□□□□ -0.41
CAPN1-225ENST00000533704 RLFQ13129 1914 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 GSG1L2A8MUP6 293 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 GJB1P08034 283 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 MAPK4P31152 587 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 HDAC1Q13547 482 aaPredicted RBP12.5□□□□□ -0.41
CAPN1-225ENST00000533704 B4GALNT3Q6L9W6 998 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 SPICE1Q8N0Z3 855 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 GCC1Q96CN9 775 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 SHISA4Q96DD7 197 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 CCDC17Q96LX7 622 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 SEC62Q99442 399 aaKnown RBP12.5□□□□□ -0.41
CAPN1-225ENST00000533704 SH2D4AQ9H788 454 aa12.5□□□□□ -0.41
CAPN1-225ENST00000533704 ZNFX1Q9P2E3 1918 aaKnown RBP12.5□□□□□ -0.41
CAPN1-225ENST00000533704 GREB1LQ9C091 1923 aaPredicted RBP12.49□□□□□ -0.41
CAPN1-225ENST00000533704 GNAT2P19087 354 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 CCNA1P78396 465 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 KIAA1755Q5JYT7 1200 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 POTEEQ6S8J3 1075 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 PLEKHH3Q7Z736 793 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 EXOC6Q8TAG9 804 aa12.49□□□□□ -0.41
CAPN1-225ENST00000533704 NKX2-3Q8TAU0 364 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms