RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 CCDC186Q7Z3E2 898 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 BLIDQ8IZY5 108 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 DYNLL2Q96FJ2 89 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 LAMB4A4D0S4 1761 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 CYP2D6P10635 497 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 MRPL12P52815 198 aaKnown RBP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 NLRP12P59046 1061 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 FEZ1Q99689 392 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 GPCPD1Q9NPB8 672 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 SUGT1Q9Y2Z0 365 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 PGBD1Q96JS3 809 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 GLT8D2Q9H1C3 349 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 ATP6V0A2Q9Y487 856 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 MYL5Q02045 173 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 TCP10Q12799 353 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 RRAGBQ5VZM2 374 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 TMTC3Q6ZXV5 915 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 TMC6Q7Z403 805 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 PODNQ7Z5L7 613 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 CCDC17Q96LX7 622 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 LRRC27Q9C0I9 530 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 VEZTQ9HBM0 779 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 GJB4Q9NTQ9 266 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 KLRK1P26718 216 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 TRAPPC10P48553 1259 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 UBASH3AP57075 661 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 NONOQ15233 471 aaKnown RBP eCLIP12.64□□□□□ -0.39
TRIM3-211ENST00000532542 RGS22Q8NE09 1264 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 EHMT1Q9H9B1 1298 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 SERPINB13Q9UIV8 391 aa12.64□□□□□ -0.39
TRIM3-211ENST00000532542 LMOD1P29536 600 aaPredicted RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 ST3GAL1Q11201 340 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 SPECC1Q5M775 1068 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 TIGD1Q96MW7 591 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 HPS5Q9UPZ3 1129 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 TNNI2P48788 182 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 CDK8P49336 464 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 CCDC150Q8NCX0 1101 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 RIOK1Q9BRS2 568 aaKnown RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 TTC12Q9H892 705 aaPredicted RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 DBNDD1Q9H9R9 158 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 FDPSP14324 419 aaKnown RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 LETM2Q2VYF4 491 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 C12orf60Q5U649 245 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 MRVI1Q9Y6F6 885 aa12.63□□□□□ -0.39
TRIM3-211ENST00000532542 NAP1L4Q99733 375 aaKnown RBP12.63□□□□□ -0.39
TRIM3-211ENST00000532542 SLC1A4P43007 532 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 PLCD1P51178 756 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 POSTNQ15063 836 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 MLKLQ8NB16 471 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 ZNF830Q96NB3 372 aaPredicted RBP12.62□□□□□ -0.39
TRIM3-211ENST00000532542 NR5A1Q13285 461 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 RBM26Q5T8P6 1007 aaKnown RBP12.62□□□□□ -0.39
TRIM3-211ENST00000532542 GTPBP4Q9BZE4 634 aaKnown RBP12.62□□□□□ -0.39
TRIM3-211ENST00000532542 ZHX3Q9H4I2 956 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
TRIM3-211ENST00000532542 PLEKHA8P1O95397 391 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 EPS15P42566 896 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 DLGAP5Q15398 846 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 REXO1Q8N1G1 1221 aaKnown RBP12.62□□□□□ -0.39
TRIM3-211ENST00000532542 CLIC6Q96NY7 704 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 LRP6O75581 1613 aa12.62□□□□□ -0.39
TRIM3-211ENST00000532542 ZNF75DP51815 510 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ADCY7P51828 1080 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 SPAG1Q07617 926 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 NIM1KQ8IY84 436 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 DHX36Q9H2U1 1008 aaKnown RBP12.61□□□□□ -0.39
TRIM3-211ENST00000532542 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.61□□□□□ -0.39
TRIM3-211ENST00000532542 BCL9LQ86UU0 1499 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 USP17L3A6NCW0 530 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 USP17L4A6NCW7 530 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 SMCO2A6NFE2 343 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 KRBA2Q6ZNG9 492 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 USP17L1Q7RTZ2 530 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 CTAGE1Q96RT6 745 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ZNHIT6Q9NWK9 470 aaKnown RBP12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ADAMTS7Q9UKP4 1686 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 GOLGA8HP0CJ92 632 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ASPRV1Q53RT3 343 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 SH2D4AQ9H788 454 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 FGFR1OPO95684 399 aaKnown RBP12.61□□□□□ -0.39
TRIM3-211ENST00000532542 GPKOWQ92917 476 aaPredicted RBP eCLIP12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ARHGEF10LQ9HCE6 1279 aa12.61□□□□□ -0.39
TRIM3-211ENST00000532542 ATRNO75882 1429 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 KIF20AO95235 890 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 PPP4CP60510 307 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 KRT79Q5XKE5 535 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 ERCC4Q92889 916 aaPredicted RBP12.6□□□□□ -0.39
TRIM3-211ENST00000532542 EXOC1Q9NV70 894 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 TTLL1O95922 423 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 NOLC1Q14978 699 aaKnown RBP eCLIP12.6□□□□□ -0.39
TRIM3-211ENST00000532542 CERKLQ49MI3 558 aaPredicted RBP12.6□□□□□ -0.39
TRIM3-211ENST00000532542 TXNRD3Q86VQ6 643 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 IFNKQ9P0W0 207 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 SPDYE3A6NKU9 549 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 GPATCH4Q5T3I0 446 aaKnown RBP12.6□□□□□ -0.39
TRIM3-211ENST00000532542 JAKMIP3Q5VZ66 844 aa12.6□□□□□ -0.39
TRIM3-211ENST00000532542 SENP2Q9HC62 589 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms