RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 TNFRSF10CO14798 259 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 RGS13O14921 159 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 DNAJA2O60884 412 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 OXCT1P55809 520 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 OVOS1Q6IE37 1185 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 SLC43A3Q8NBI5 491 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 OR6P1Q8NGX9 317 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 PPP1R13LQ8WUF5 828 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 MISP3Q96FF7 219 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 TNKS2Q9H2K2 1166 aa7.71□□□□□ -1.18
CD44-231ENST00000531110 CHURC1-FNTBB4DL54 471 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 IFI16Q16666 785 aaKnown RBP7.7□□□□□ -1.18
CD44-231ENST00000531110 SFRP5Q5T4F7 317 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 ARTNQ5T4W7 220 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 NLRC3Q7RTR2 1065 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 VPS37DQ86XT2 251 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 NETO1Q8TDF5 533 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 ATG4CQ96DT6 458 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 FERD3LQ96RJ6 166 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 TM9SF2Q99805 663 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 DPH2Q9BQC3 489 aaPredicted RBP7.7□□□□□ -1.18
CD44-231ENST00000531110 TINF2Q9BSI4 451 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 GINM1Q9NU53 330 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 BSDC1Q9NW68 430 aaPredicted RBP7.7□□□□□ -1.18
CD44-231ENST00000531110 KLHL3Q9UH77 587 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 SNX11Q9Y5W9 270 aa7.7□□□□□ -1.18
CD44-231ENST00000531110 UPK3BL1B0FP48 263 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 UPK3BL2E5RIL1 263 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 CEACAM5P06731 702 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 HMGB1P09429 215 aaKnown RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 RAG1P15918 1043 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 ATF4P18848 351 aaPredicted RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 CLCN7P51798 805 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 ZC3H6P61129 1189 aaKnown RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 STK11IPQ8N1F8 1099 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 PIWIL2Q8TC59 973 aaKnown RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 C8orf37Q96NL8 207 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 ASPNQ9BXN1 380 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.69□□□□□ -1.18
CD44-231ENST00000531110 CAPN10Q9HC96 672 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 ZC3H7BQ9UGR2 993 aaKnown RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 TPX2Q9ULW0 747 aaKnown RBP7.69□□□□□ -1.18
CD44-231ENST00000531110 EFR3BQ9Y2G0 817 aa7.69□□□□□ -1.18
CD44-231ENST00000531110 TMEM265A0A087WTH1 108 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 GNAT3A8MTJ3 354 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 NME1P15531 152 aaKnown RBP7.68□□□□□ -1.18
CD44-231ENST00000531110 HOXA10P31260 410 aaPredicted RBP7.68□□□□□ -1.18
CD44-231ENST00000531110 ARSHQ5FYA8 562 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 PHACTR4Q8IZ21 702 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 RNF141Q8WVD5 230 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 FBXL18Q96ME1 805 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 GMLQ99445 158 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 LRRC4CQ9HCJ2 640 aa7.68□□□□□ -1.18
CD44-231ENST00000531110 BCCIPQ9P287 314 aaKnown RBP eCLIP7.68□□□□□ -1.18
CD44-231ENST00000531110 COL17A1Q9UMD9 1497 aaPredicted RBP7.68□□□□□ -1.18
CD44-231ENST00000531110 GIPRP48546 466 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 TNNI2P48788 182 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 ARHGAP27Q6ZUM4 889 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 VSIG10LQ86VR7 867 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 MFSD4AQ8N468 514 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 C19orf47Q8N9M1 422 aaKnown RBP7.67□□□□□ -1.18
CD44-231ENST00000531110 RIN3Q8TB24 985 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 XAGE3Q8WTP9 111 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 SRRTQ9BXP5 876 aaKnown RBP7.67□□□□□ -1.18
CD44-231ENST00000531110 PCGF6Q9BYE7 350 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 PPT2Q9UMR5 302 aa7.67□□□□□ -1.18
CD44-231ENST00000531110 MED26O95402 600 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 NASPP49321 788 aaPredicted RBP7.66□□□□□ -1.18
CD44-231ENST00000531110 RNF4P78317 190 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 SPACA3Q8IXA5 215 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 CRBNQ96SW2 442 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 PCMTD2Q9NV79 361 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 VAV3Q9UKW4 847 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 SLC12A7Q9Y666 1083 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 CAPN6Q9Y6Q1 641 aa7.66□□□□□ -1.18
CD44-231ENST00000531110 HYAL3O43820 417 aaPredicted RBP7.65□□□□□ -1.18
CD44-231ENST00000531110 UBOX5O94941 541 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 HSP90B1P14625 803 aaKnown RBP7.65□□□□□ -1.18
CD44-231ENST00000531110 SSTR4P31391 388 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 GBP1P32455 592 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 EIF6P56537 245 aaKnown RBP7.65□□□□□ -1.18
CD44-231ENST00000531110 PRKCQQ04759 706 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 NKPD1Q17RQ9 610 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 THAP5Q7Z6K1 395 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 CDH24Q86UP0 819 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 LSRQ86X29 649 aaPredicted RBP7.65□□□□□ -1.18
CD44-231ENST00000531110 FAM181AQ8N9Y4 354 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 VWCEQ96DN2 955 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 KIF2CQ99661 725 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 ZFP64Q9NPA5 681 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 PLAGL2Q9UPG8 496 aa7.65□□□□□ -1.18
CD44-231ENST00000531110 GUCY2CP25092 1073 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 ARID5AQ03989 594 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 PLD6Q8N2A8 252 aaKnown RBP7.64□□□□□ -1.19
CD44-231ENST00000531110 BAHD1Q8TBE0 780 aaPredicted RBP7.64□□□□□ -1.19
CD44-231ENST00000531110 SHDQ96IW2 340 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 DHRS1Q96LJ7 313 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 KREMEN1Q96MU8 473 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 KCNH3Q9ULD8 1083 aa7.64□□□□□ -1.19
CD44-231ENST00000531110 U3KQE9 123 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms