RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MAGEB6P1A0A0J9YX57 407 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 WDR24Q96S15 920 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 CARD6Q9BX69 1037 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 FHOD1Q9Y613 1164 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 ZNF804BA4D1E1 1349 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 A0A1B0GUL6 1792 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 A0A1B0GTH6 734 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 hCG_1642624A0A1W2PR95 340 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 MNS1Q8NEH6 495 aa21.96■■□□□ 1.11
VPS28-213ENST00000530983 RIOK1Q9BRS2 568 aaKnown RBP21.96■■□□□ 1.11
VPS28-213ENST00000530983 MYH14Q7Z406 1995 aaKnown RBP21.96■■□□□ 1.11
VPS28-213ENST00000530983 GOLGA6L9A6NEM1 432 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 PRDM1O75626 825 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 AKAP17AQ02040 695 aaKnown RBP21.95■■□□□ 1.1
VPS28-213ENST00000530983 APTXQ7Z2E3 356 aaKnown RBP21.95■■□□□ 1.1
VPS28-213ENST00000530983 ZSCAN10Q96SZ4 725 aaPredicted RBP21.95■■□□□ 1.1
VPS28-213ENST00000530983 DLEC1Q9Y238 1755 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 RREB1Q92766 1687 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 EFCAB8A8MWE9 144 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 WNT7AO00755 349 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 XBP1P17861 261 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 KRT2P35908 639 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 BMS1Q14692 1282 aaKnown RBP21.95■■□□□ 1.1
VPS28-213ENST00000530983 SH3RF1Q7Z6J0 888 aa21.95■■□□□ 1.1
VPS28-213ENST00000530983 NIP7Q9Y221 180 aaKnown RBP eCLIP21.95■■□□□ 1.1
VPS28-213ENST00000530983 PRPF3O43395 683 aaKnown RBP21.94■■□□□ 1.1
VPS28-213ENST00000530983 PLEKHA8P1O95397 391 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 ST7Q9NRC1 585 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 CYP2D7A0A087X1C5 515 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 WTIPA6NIX2 430 aaPredicted RBP21.94■■□□□ 1.1
VPS28-213ENST00000530983 CD44P16070 742 aaKnown RBP21.94■■□□□ 1.1
VPS28-213ENST00000530983 AFMP43652 599 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 GYG1P46976 350 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 GNG11P61952 73 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 SYMPKQ92797 1274 aaKnown RBP21.94■■□□□ 1.1
VPS28-213ENST00000530983 PAGE5Q96GU1 130 aa21.94■■□□□ 1.1
VPS28-213ENST00000530983 COL22A1Q8NFW1 1626 aaPredicted RBP21.94■■□□□ 1.1
VPS28-213ENST00000530983 CASP1P29466 404 aa21.93■■□□□ 1.1
VPS28-213ENST00000530983 CUL4BQ13620 913 aa21.93■■□□□ 1.1
VPS28-213ENST00000530983 V9GY48 417 aaPredicted RBP21.93■■□□□ 1.1
VPS28-213ENST00000530983 TAF1P21675 1872 aa21.93■■□□□ 1.1
VPS28-213ENST00000530983 TEX33O43247 280 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 ZRANB2O95218 330 aaKnown RBP eCLIP21.92■■□□□ 1.12e-7■■□□□ 13.6
VPS28-213ENST00000530983 CASQ1P31415 396 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 ATP6V1AP38606 617 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 MAP3K9P80192 1104 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 IFIT1BQ5T764 474 aaKnown RBP21.92■■□□□ 1.1
VPS28-213ENST00000530983 KIFC2Q96AC6 838 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 DESI2Q9BSY9 194 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 PNMA6AP0CW24 399 aaPredicted RBP21.92■■□□□ 1.1
VPS28-213ENST00000530983 TROAPQ12815 778 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 NPY5RQ15761 445 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 NOM1Q5C9Z4 860 aaKnown RBP21.92■■□□□ 1.1
VPS28-213ENST00000530983 CT47A1Q5JQC4 288 aaPredicted RBP21.92■■□□□ 1.1
VPS28-213ENST00000530983 SPATA1Q5VX52 437 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 CATIPQ7Z7H3 387 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 TNFRSF25Q93038 417 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 TMEM51Q9NW97 253 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 SYNRGQ9UMZ2 1314 aa21.92■■□□□ 1.1
VPS28-213ENST00000530983 DYNLL1P63167 89 aaKnown RBP21.91■■□□□ 1.1
VPS28-213ENST00000530983 FAM193AP78312 1265 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 DPYDQ12882 1025 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 MTF1Q14872 753 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 FERMT2Q96AC1 680 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 GTF2E1P29083 439 aaPredicted RBP21.91■■□□□ 1.1
VPS28-213ENST00000530983 KLHL10Q6JEL2 608 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 ZNF384Q8TF68 577 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 BBXQ8WY36 941 aaPredicted RBP21.91■■□□□ 1.1
VPS28-213ENST00000530983 CCDC34Q96HJ3 373 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 MRFAP1Q9Y605 127 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 SCN7AQ01118 1682 aa21.91■■□□□ 1.1
VPS28-213ENST00000530983 AKR1B15C9JRZ8 316 aaPredicted RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 ZBTB22O15209 634 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 STX17P56962 302 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 ITPK1Q13572 414 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 CDKAL1Q5VV42 579 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 PANX2Q96RD6 677 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 BRIP1Q9BX63 1249 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 RBM28Q9NW13 759 aaKnown RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 ARGLU1Q9NWB6 273 aaPredicted RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 COL16A1Q07092 1604 aaPredicted RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 CASZ1Q86V15 1759 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 FGRP09769 529 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 PBX1P40424 430 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 GSDMAQ96QA5 445 aa21.9■■□□□ 1.1
VPS28-213ENST00000530983 CDC5LQ99459 802 aaKnown RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 MRPL44Q9H9J2 332 aaKnown RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 ADD3Q9UEY8 706 aaKnown RBP21.9■■□□□ 1.1
VPS28-213ENST00000530983 SOWAHDA6NJG2 315 aa21.89■■□□□ 1.1
VPS28-213ENST00000530983 BMP15O95972 392 aa21.89■■□□□ 1.1
VPS28-213ENST00000530983 ZNF174Q15697 407 aa21.89■■□□□ 1.1
VPS28-213ENST00000530983 IQCA1Q86XH1 822 aa21.89■■□□□ 1.1
VPS28-213ENST00000530983 SMYD4Q8IYR2 804 aaPredicted RBP21.89■■□□□ 1.1
VPS28-213ENST00000530983 GNL3LQ9NVN8 582 aaKnown RBP21.89■■□□□ 1.1
VPS28-213ENST00000530983 LOC102724428A0A0B4J2F2 783 aa21.89■■□□□ 1.09
VPS28-213ENST00000530983 A0A0G2JS52 829 aa21.89■■□□□ 1.09
VPS28-213ENST00000530983 SIK1P57059 783 aa21.89■■□□□ 1.09
VPS28-213ENST00000530983 TMCO3Q6UWJ1 677 aa21.89■■□□□ 1.09
VPS28-213ENST00000530983 TMTC3Q6ZXV5 915 aa21.89■■□□□ 1.09
VPS28-213ENST00000530983 PPP1R3GB7ZBB8 358 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms