RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 UPF3BQ9BZI7 483 aaKnown RBP16.17■□□□□ 0.18
CD44-224ENST00000526669 IL17RBQ9NRM6 502 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 COL11A1P12107 1806 aaPredicted RBP16.17■□□□□ 0.18
CD44-224ENST00000526669 IGKV6D-41A0A0C4DH26 115 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 USP17L5A8MUK1 530 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 MCM5P33992 734 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 GJA5P36382 358 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 RBM25P49756 843 aaKnown RBP16.16■□□□□ 0.18
CD44-224ENST00000526669 ANAPC15P60006 121 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 CHMP4CQ96CF2 233 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 OPTNQ96CV9 577 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 GPHNQ9NQX3 736 aaPredicted RBP16.16■□□□□ 0.18
CD44-224ENST00000526669 TNKSO95271 1327 aa16.16■□□□□ 0.18
CD44-224ENST00000526669 IFIT3O14879 490 aaKnown RBP16.15■□□□□ 0.18
CD44-224ENST00000526669 EEF2P13639 858 aaKnown RBP16.15■□□□□ 0.18
CD44-224ENST00000526669 RPS6KB1P23443 525 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 PSMA5P28066 241 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 ZNF157P51786 506 aaPredicted RBP16.15■□□□□ 0.18
CD44-224ENST00000526669 GRM1Q13255 1194 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 ZYXQ15942 572 aaKnown RBP16.15■□□□□ 0.18
CD44-224ENST00000526669 IQCA1Q86XH1 822 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 ACER1Q8TDN7 264 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 WNK4Q96J92 1243 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 UBAC1Q9BSL1 405 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 SENP2Q9HC62 589 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 GINM1Q9NU53 330 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 STX8Q9UNK0 236 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 ZHX2Q9Y6X8 837 aa16.15■□□□□ 0.18
CD44-224ENST00000526669 SPDYE5A6NIY4 337 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 ECE1P42892 770 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 DGKZQ13574 1117 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 TMEM67Q5HYA8 995 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 RGMBQ6NW40 437 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 DHX32Q7L7V1 743 aaKnown RBP16.14■□□□□ 0.17
CD44-224ENST00000526669 ERO1BQ86YB8 467 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 RASAL3Q86YV0 1011 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 LRRC47Q8N1G4 583 aaKnown RBP16.14■□□□□ 0.17
CD44-224ENST00000526669 ZSCAN10Q96SZ4 725 aaPredicted RBP16.14■□□□□ 0.17
CD44-224ENST00000526669 KIF2CQ99661 725 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 ZSWIM6Q9HCJ5 1215 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 CREBZFQ9NS37 354 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 MTMR4Q9NYA4 1195 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 CLIP2Q9UDT6 1046 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 MTMR7Q9Y216 660 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 CYP46A1Q9Y6A2 500 aa16.14■□□□□ 0.17
CD44-224ENST00000526669 SMCHD1A6NHR9 2005 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 A0A1W2PRG0 241 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 TRIM75PA6NK02 468 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 RAD21O60216 631 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 C1QTNF8P60827 252 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 EXOSC10Q01780 885 aaKnown RBP16.13■□□□□ 0.17
CD44-224ENST00000526669 SPP2Q13103 211 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 WTAPQ15007 396 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 RCSD1Q6JBY9 416 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 CYP4F22Q6NT55 531 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 Q6ZUG5 572 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 RUFY3Q7L099 469 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 SIAH1Q8IUQ4 282 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 ENAHQ8N8S7 591 aaPredicted RBP16.13■□□□□ 0.17
CD44-224ENST00000526669 FEZ1Q99689 392 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 TM6SF1Q9BZW5 370 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 KANSL2Q9H9L4 492 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 AS3MTQ9HBK9 375 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 ARHGEF10LQ9HCE6 1279 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 TCP11L1Q9NUJ3 509 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 RLFQ13129 1914 aa16.13■□□□□ 0.17
CD44-224ENST00000526669 ERICH2A1L162 156 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 SH2B2O14492 632 aaPredicted RBP16.12■□□□□ 0.17
CD44-224ENST00000526669 IRF6O14896 467 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 TTLL1O95922 423 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 HMGB1P09429 215 aaKnown RBP16.12■□□□□ 0.17
CD44-224ENST00000526669 FGD1P98174 961 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 PPATQ06203 517 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 PPIL2Q13356 520 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 MTMR2Q13614 643 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 SART3Q15020 963 aaKnown RBP16.12■□□□□ 0.17
CD44-224ENST00000526669 SEC23AQ15436 765 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 NOL8Q76FK4 1167 aaKnown RBP16.12■□□□□ 0.17
CD44-224ENST00000526669 RASGRP2Q7LDG7 609 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 ZNF280CQ8ND82 737 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 NYAP2Q9P242 653 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 AFG3L2Q9Y4W6 797 aa16.12■□□□□ 0.17
CD44-224ENST00000526669 UNCXA6NJT0 531 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 SLC10A3P09131 477 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 IFIT1BQ5T764 474 aaKnown RBP16.11■□□□□ 0.17
CD44-224ENST00000526669 RAB11FIP4Q86YS3 637 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 IGDCC4Q8TDY8 1250 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 IL17RAQ96F46 866 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 TMEM87BQ96K49 555 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 TMEM47Q9BQJ4 181 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 LARP6Q9BRS8 491 aaKnown RBP16.11■□□□□ 0.17
CD44-224ENST00000526669 WDR18Q9BV38 432 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 LY9Q9HBG7 655 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 PDRG1Q9NUG6 133 aa16.11■□□□□ 0.17
CD44-224ENST00000526669 USP17L10C9JJH3 530 aa16.1■□□□□ 0.17
CD44-224ENST00000526669 NT5C2P49902 561 aa16.1■□□□□ 0.17
CD44-224ENST00000526669 NEK4P51957 841 aa16.1■□□□□ 0.17
CD44-224ENST00000526669 HMGCS2P54868 508 aa16.1■□□□□ 0.17
CD44-224ENST00000526669 APOBRQ0VD83 1088 aa16.1■□□□□ 0.17
CD44-224ENST00000526669 DEFB115Q30KQ5 88 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms