RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 GCLCP48506 637 aaPredicted RBP25.06■■□□□ 1.6
VPS28-203ENST00000524521 SEC62Q99442 399 aaKnown RBP25.06■■□□□ 1.6
VPS28-203ENST00000524521 P2RX7Q99572 595 aaKnown RBP25.06■■□□□ 1.6
VPS28-203ENST00000524521 ARPP21Q9UBL0 812 aaPredicted RBP25.06■■□□□ 1.6
VPS28-203ENST00000524521 SRRDQ9UH36 339 aa25.06■■□□□ 1.6
VPS28-203ENST00000524521 USP14P54578 494 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 MLLT1Q03111 559 aaPredicted RBP25.05■■□□□ 1.6
VPS28-203ENST00000524521 SLC9C1Q4G0N8 1177 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 ZMYM1Q5SVZ6 1142 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 GIMAP6Q6P9H5 292 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 C16orf86Q6ZW13 317 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 CHD1LQ86WJ1 897 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 EVI5LQ96CN4 794 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 KIAA1683Q9H0B3 1180 aa25.05■■□□□ 1.6
VPS28-203ENST00000524521 MINDY4BA8MYZ0 360 aa25.04■■□□□ 1.6
VPS28-203ENST00000524521 SBK1Q52WX2 424 aa25.04■■□□□ 1.6
VPS28-203ENST00000524521 TMEM179Q6ZVK1 233 aa25.04■■□□□ 1.6
VPS28-203ENST00000524521 NBPF11Q86T75 865 aa25.04■■□□□ 1.6
VPS28-203ENST00000524521 ARMC5Q96C12 935 aa25.04■■□□□ 1.6
VPS28-203ENST00000524521 PATL2C9JE40 543 aaKnown RBP25.03■■□□□ 1.6
VPS28-203ENST00000524521 AKR1B1P15121 316 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 NUCB1Q02818 461 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 FAM110CQ1W6H9 321 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 STK11IPQ8N1F8 1099 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 RAET1EQ8TD07 263 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 C12orf42Q96LP6 360 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 CCDC17Q96LX7 622 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 MYPNQ86TC9 1320 aa25.03■■□□□ 1.6
VPS28-203ENST00000524521 TDO2P48775 406 aa25.02■■□□□ 1.6
VPS28-203ENST00000524521 TNPO2O14787 897 aaKnown RBP25.01■■□□□ 1.59
VPS28-203ENST00000524521 HERVK_113P62684 666 aa25.01■■□□□ 1.59
VPS28-203ENST00000524521 PRKCZQ05513 592 aa25.01■■□□□ 1.59
VPS28-203ENST00000524521 IFNL3Q8IZI9 196 aa25.01■■□□□ 1.59
VPS28-203ENST00000524521 SH3TC2Q8TF17 1288 aa25.01■■□□□ 1.59
VPS28-203ENST00000524521 EPB41L4AQ9HCS5 686 aaPredicted RBP25.01■■□□□ 1.59
VPS28-203ENST00000524521 GABRQQ9UN88 632 aa25.01■■□□□ 1.59
VPS28-203ENST00000524521 MYH8P13535 1937 aa25■■□□□ 1.59
VPS28-203ENST00000524521 A0A1W2PRG0 241 aa25■■□□□ 1.59
VPS28-203ENST00000524521 TRIM6-TRIM34B2RNG4 842 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L15C9J2P7 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L13C9JLJ4 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L11C9JVI0 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L18D6R9N7 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L22D6RA61 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L17D6RBQ6 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L19D6RCP7 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L20D6RJB6 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 USP17L24Q0WX57 530 aa25■■□□□ 1.59
VPS28-203ENST00000524521 NACAP1Q9BZK3 213 aa25■■□□□ 1.59
VPS28-203ENST00000524521 MGAMO43451 1857 aa25■■□□□ 1.59
VPS28-203ENST00000524521 MYCP01106 439 aaPredicted RBP24.99■■□□□ 1.59
VPS28-203ENST00000524521 VCAM1P19320 739 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 CLEC10AQ8IUN9 316 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 PLEKHM2Q8IWE5 1019 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 COA7Q96BR5 231 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 ZNF333Q96JL9 665 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 MKNK2Q9HBH9 465 aa24.99■■□□□ 1.59
VPS28-203ENST00000524521 PEX10O60683 326 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 ICA1Q05084 483 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 CATSPERGQ6ZRH7 1159 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 CCDC129Q6ZRS4 1044 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 RILPL2Q969X0 211 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 ARHGEF10LQ9HCE6 1279 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 MORF4L1Q9UBU8 362 aa24.98■■□□□ 1.59
VPS28-203ENST00000524521 GRK4P32298 578 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 FLT3LGP49771 235 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 ATP2B2Q01814 1243 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 SIAH1Q8IUQ4 282 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 GPRC5AQ8NFJ5 357 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 PAGR1Q9BTK6 254 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 TMEM106CQ9BVX2 250 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 RPAP3Q9H6T3 665 aaPredicted RBP24.97■■□□□ 1.59
VPS28-203ENST00000524521 TXNRD2Q9NNW7 524 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 RBPJLQ9UBG7 517 aa24.97■■□□□ 1.59
VPS28-203ENST00000524521 POTEFA5A3E0 1075 aa24.96■■□□□ 1.59
VPS28-203ENST00000524521 GTF3C2Q8WUA4 911 aaPredicted RBP24.96■■□□□ 1.59
VPS28-203ENST00000524521 NAPBQ9H115 298 aa24.96■■□□□ 1.59
VPS28-203ENST00000524521 KANSL2Q9H9L4 492 aa24.96■■□□□ 1.59
VPS28-203ENST00000524521 BIN2Q9UBW5 565 aaPredicted RBP24.96■■□□□ 1.59
VPS28-203ENST00000524521 RASA1P20936 1047 aa24.95■■□□□ 1.58
VPS28-203ENST00000524521 OSBPL3Q9H4L5 887 aa24.95■■□□□ 1.58
VPS28-203ENST00000524521 SH2D4AQ9H788 454 aa24.95■■□□□ 1.58
VPS28-203ENST00000524521 HELLSQ9NRZ9 838 aa24.95■■□□□ 1.58
VPS28-203ENST00000524521 TMX2Q9Y320 296 aa24.95■■□□□ 1.58
VPS28-203ENST00000524521 EEF2P13639 858 aaKnown RBP24.94■■□□□ 1.58
VPS28-203ENST00000524521 Q3C1V9 767 aa24.94■■□□□ 1.58
VPS28-203ENST00000524521 ZNF287Q9HBT7 754 aa24.94■■□□□ 1.58
VPS28-203ENST00000524521 ROBO3Q96MS0 1386 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 ADCY3O60266 1144 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 PRDM1O75626 825 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 ERVK-9P63128 1117 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 ERVK-24P63145 666 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 KIAA1755Q5JYT7 1200 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 POTEEQ6S8J3 1075 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 TICAM2Q86XR7 235 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 CCAR1Q8IX12 1150 aaKnown RBP24.93■■□□□ 1.58
VPS28-203ENST00000524521 ZNF444Q8N0Y2 327 aaPredicted RBP24.93■■□□□ 1.58
VPS28-203ENST00000524521 FAM227BQ96M60 508 aa24.93■■□□□ 1.58
VPS28-203ENST00000524521 DOCK3Q8IZD9 2030 aa24.92■■□□□ 1.58
VPS28-203ENST00000524521 MCMDC2Q4G0Z9 681 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms