RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 CREG2Q8IUH2 290 aa1.28□□□□□ -2.2
RNU6-539P-201ENST00000516665 PHF6Q8IWS0 365 aaKnown RBP eCLIP1.28□□□□□ -2.2
RNU6-539P-201ENST00000516665 NXPE3Q969Y0 559 aa1.28□□□□□ -2.2
RNU6-539P-201ENST00000516665 TRIM56Q9BRZ2 755 aaKnown RBP1.28□□□□□ -2.2
RNU6-539P-201ENST00000516665 EBF1Q9UH73 591 aa1.28□□□□□ -2.2
RNU6-539P-201ENST00000516665 TRIM66O15016 1216 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 NUDT3O95989 172 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 CBSLP0DN79 551 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 LIG1P18858 919 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 CBSP35520 551 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 EIF4G2P78344 907 aaKnown RBP eCLIP1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 HTRA3P83110 453 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 NRN1LQ496H8 165 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 ASAP3Q8TDY4 903 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 CORO1BQ9BR76 489 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 SSU72Q9NP77 194 aaKnown RBP1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 ABI2Q9NYB9 513 aaPredicted RBP1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 SALL4Q9UJQ4 1053 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 PMF1-BGLAPU3KQ54 211 aa1.27□□□□□ -2.21
RNU6-539P-201ENST00000516665 SYNGAP1Q96PV0 1343 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 PIK3CDO00329 1044 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 KRT4P19013 534 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 C11orf91Q3C1V1 193 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 PLEKHN1Q494U1 663 aaPredicted RBP1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 OLFML2BQ68BL8 750 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 MPRIPQ6WCQ1 1025 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 PRIMA1Q86XR5 153 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 Q8N9P0 234 aaPredicted RBP1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 IGDCC4Q8TDY8 1250 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 KLHL14Q9P2G3 628 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 RNF7Q9UBF6 113 aa1.26□□□□□ -2.21
RNU6-539P-201ENST00000516665 ADH4P08319 380 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 LCE1CQ5T751 118 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 LCE1BQ5T7P3 118 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 CCDC102BQ68D86 513 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 USP43Q70EL4 1123 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 LGI4Q8N135 537 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 GGNBP2Q9H3C7 697 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 SEMA4AQ9H3S1 761 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 PCDHGC5Q9Y5F6 944 aa1.25□□□□□ -2.21
RNU6-539P-201ENST00000516665 ZBTB7BO15156 539 aaPredicted RBP1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 KRTAP10-1P60331 282 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 VAC14Q08AM6 782 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 ZNF423Q2M1K9 1284 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 USP39Q53GS9 565 aaKnown RBP1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 Q6ZPA2 131 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 BARGINQ6ZT62 677 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 C22orf34Q6ZV56 151 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 UBE3DQ7Z6J8 389 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 ZKSCAN3Q9BRR0 538 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 TTPALQ9BTX7 342 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 MMRN2Q9H8L6 949 aa1.24□□□□□ -2.21
RNU6-539P-201ENST00000516665 METTL12A8MUP2 240 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 PATE3B3GLJ2 98 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 M0R2N6 131 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 ABLIM1O14639 778 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 RFX1P22670 979 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 FOXO4P98177 505 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 CHRNEQ04844 493 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 EGR3Q06889 387 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 NCOA4Q13772 614 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 GRM2Q14416 872 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 SH3D19Q5HYK7 790 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 SFRP5Q5T4F7 317 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 FNDC7Q5VTL7 733 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 CIR1Q86X95 450 aaPredicted RBP1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 SPPL2CQ8IUH8 684 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 DEPDC4Q8N2C3 294 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 ADAMTS17Q8TE56 1095 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 SMARCC1Q92922 1105 aaPredicted RBP1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 OSMRQ99650 979 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 ZFYVE1Q9HBF4 777 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 CNTN3Q9P232 1028 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 ADAM29Q9UKF5 820 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 LRFN2Q9ULH4 789 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 NDUFB9Q9Y6M9 179 aa1.23□□□□□ -2.21
RNU6-539P-201ENST00000516665 TRIOBPQ9H2D6 2365 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 NPEPPSL1A6NEC2 478 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 U2SURPO15042 1029 aaKnown RBP1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 LAMTOR5O43504 91 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 ZNF862O60290 1169 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 EIF4EBP3O60516 100 aaPredicted RBP1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 LGR5O75473 907 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 CBX7O95931 251 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 PFKLP17858 780 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 CD38P28907 300 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 SARSP49591 514 aaKnown RBP1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 KRT71Q3SY84 523 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 GPR150Q8NGU9 434 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 CCDC86Q9H6F5 360 aaKnown RBP1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 SLC2A4RGQ9NR83 387 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 TMEM63CQ9P1W3 806 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 SLAIN2Q9P270 581 aa1.22□□□□□ -2.21
RNU6-539P-201ENST00000516665 A6NJR5 290 aa1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 ZNF623O75123 536 aa1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 ERVFRD-1P60508 538 aa1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 CLDN10P78369 228 aa1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 ZNF200P98182 395 aaPredicted RBP1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 TNK2Q07912 1038 aa1.21□□□□□ -2.22
RNU6-539P-201ENST00000516665 PCDH1Q08174 1060 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms