RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 LRFN2Q9ULH4 789 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCDHA4Q9UN74 947 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 BCS1LQ9Y276 419 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MYRFQ9Y2G1 1151 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TAF6LQ9Y6J9 622 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NCANO14594 1321 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TLDC2A0PJX2 215 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRAMEF27A3QJZ7 478 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CARNS1A5YM72 827 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ANKRD33BA6NCL7 494 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SOWAHDA6NJG2 315 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 HMGB1P1B2RPK0 211 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 H3BRB1 525 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 K7ESM1 405 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 EIF1AYO14602 144 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMPRSS2O15393 492 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAFGO15525 162 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAFKO60675 156 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ICMTO60725 284 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADAM11O75078 769 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 WISP1O95388 367 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PAPLNO95428 1278 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PGRP06401 933 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 RNASE1P07998 156 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF865P0CJ78 1059 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MED14OSP0DP75 135 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 IMPDH2P12268 514 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 BMP7P18075 431 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 IBSPP21815 317 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 EIF4BP23588 611 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAPK1P28482 360 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TPP2P29144 1249 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 HOXA10P31260 410 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIR2DL1P43626 348 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIR2DL2P43627 348 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 KCNC1P48547 511 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 AFF3P51826 1226 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 OXCT1P55809 520 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 GJA9P57773 515 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 LINC00310P59036 64 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CAP1Q01518 475 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 EGR3Q06889 387 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDK5R2Q13319 367 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLC9A5Q14940 896 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TCEAL1Q15170 157 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRIP4Q15650 581 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CHRNA2Q15822 529 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC85BQ15834 202 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF124Q15973 351 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 OCLNQ16625 522 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 BBS9Q3SYG4 887 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 NAALADL2Q58DX5 795 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 NBPF12Q5TAG4 269 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SOGA3Q5TF21 947 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC181Q5TID7 509 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM164Q5U3C3 297 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDKAL1Q5VV42 579 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 HLA-DQA1Q5Y7H0 255 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 LETMD1Q6P1Q0 360 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 GLB1LQ6UWU2 654 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYP2R1Q6VVX0 501 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 RNF111Q6ZNA4 994 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOL8Q76FK4 1167 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ARMCX6Q7L4S7 300 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 DPH6Q7L8W6 267 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 VN1R5Q7Z5H4 357 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 FRMD5Q7Z6J6 570 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRRT2Q7Z6L0 340 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC84Q86UT8 332 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H18Q86VM9 953 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CREG2Q8IUH2 290 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 RELL1Q8IUW5 271 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PHACTR4Q8IZ21 702 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLD6Q8N2A8 252 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF655Q8N720 491 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLC43A3Q8NBI5 491 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 LRRN4CLQ8ND94 238 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 WDR48Q8TAF3 677 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CXorf38Q8TB03 319 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADAMTS19Q8TE59 1207 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ANKRD24Q8TF21 1146 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 GIPC2Q8TF65 315 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 UBE2Q2Q8WVN8 375 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SMARCC1Q92922 1105 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 UBE2FQ969M7 185 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ARMC5Q96C12 935 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC74BQ96LY2 380 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MIPEPQ99797 713 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 YIPF4Q9BSR8 244 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 WDR18Q9BV38 432 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ASPNQ9BXN1 380 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCGF6Q9BYE7 350 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 NIF3L1Q9GZT8 377 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 IRF2BPLQ9H1B7 796 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TNKS2Q9H2K2 1166 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMX1Q9H3N1 280 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 GSX1Q9H4S2 264 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TUT1Q9H6E5 874 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MYH16Q9H6N6 1097 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ANTXR1Q9H6X2 564 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms