RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 USP17L12C9JPN9 530 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 USP17L21D6R901 530 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 ZNF213O14771 459 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 SGSM2O43147 1006 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 HSPD1P10809 573 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 MAP2K2P36507 400 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 PLCD1P51178 756 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 KIF23Q02241 960 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 SREBF2Q12772 1141 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 RRP1BQ14684 758 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 C12orf60Q5U649 245 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 METTL16Q86W50 562 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 ERO1BQ86YB8 467 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 MARVELD3Q96A59 401 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 UPF2Q9HAU5 1272 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 ANO2Q9NQ90 1003 aa9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-222ENST00000515847 CYP2D7A0A087X1C5 515 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 MINDY4BA8MYZ0 360 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 SMIM22K7EJ46 135 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 HSPA1AP0DMV8 641 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 HSPA1BP0DMV9 641 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 ZKSCAN1P17029 563 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 INHBEP58166 350 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 PPATQ06203 517 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 PPARAQ07869 468 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 SHROOM1Q2M3G4 852 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 CERKLQ49MI3 558 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 CCDC178Q5BJE1 867 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 OTUD7BQ6GQQ9 843 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 TMEM179Q6ZVK1 233 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 C16orf86Q6ZW13 317 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 ZNF589Q86UQ0 364 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 PHIPQ8WWQ0 1821 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 ESYT1Q9BSJ8 1104 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 BEGAINQ9BUH8 593 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 WBP1LQ9NX94 342 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 ANAPC4Q9UJX5 808 aa9.18□□□□□ -0.94
LIMCH1-222ENST00000515847 MYH8P13535 1937 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 MANSC4A6NHS7 340 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 IRF6O14896 467 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 FOXP2O15409 715 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 GDF11O95390 407 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 PTPRAP18433 802 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 SHMT1P34896 483 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 CAP2P40123 477 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 GTF2A2P52657 109 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 USP14P54578 494 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 MAP2K1Q02750 393 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 GABPAQ06546 454 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 PABPC4Q13310 644 aaKnown RBP eCLIP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 PPIL2Q13356 520 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 KRT32Q14532 448 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 SART3Q15020 963 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ABCB5Q2M3G0 1257 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 CTR9Q6PD62 1173 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 RALYLQ86SE5 291 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 CCDC84Q86UT8 332 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ZNF444Q8N0Y2 327 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 SLC44A5Q8NCS7 719 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ESR2Q92731 530 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ZFP91Q96JP5 570 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 KRT23Q9C075 422 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 ARHGEF10LQ9HCE6 1279 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 TOMM22Q9NS69 142 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 SYNPO2Q9UMS6 1093 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 PTPRFP10586 1907 aa9.17□□□□□ -0.94
LIMCH1-222ENST00000515847 PLIN4Q96Q06 1357 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 TSPY2A6NKD2 308 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 USP17L5A8MUK1 530 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 MPHOSPH10O00566 681 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 CA12O43570 354 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 ALDH1A1P00352 501 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 TSPY3P0CV98 308 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 TSPY8P0CW00 308 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 JAG1P78504 1218 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 SNAPC2Q13487 334 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 VPS53Q5VIR6 699 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 TATDN1Q6P1N9 297 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 MFSD6Q6ZSS7 791 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 IQCA1Q86XH1 822 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 DYNLL2Q96FJ2 89 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 MS4A4AQ96JQ5 239 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 FEZ1Q99689 392 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 ZCCHC17Q9NP64 241 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 TMOD4Q9NZQ9 345 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 ZBTB21Q9ULJ3 1066 aa9.16□□□□□ -0.94
LIMCH1-222ENST00000515847 CCL15-CCL14A0A0B4J2E2 113 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 ERICH2A1L162 156 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 IGF2BP3O00425 579 aaKnown RBP eCLIP9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 CXCL11O14625 94 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 FOXN1O15353 648 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 ORC4O43929 436 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 GH2P01242 217 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 FGAP02671 866 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 CETPP11597 493 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 TM4SF4P48230 202 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 CDK8P49336 464 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 ICA1Q05084 483 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms