RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PASKQ96RG2 1323 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 GPC4O75487 556 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 TRIM31Q9BZY9 425 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 CAMSAP2Q08AD1 1489 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 APOA1P02647 267 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 KRT4P19013 534 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 E2F5Q15329 346 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 JADE1Q6IE81 842 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 GDAP1L1Q96MZ0 367 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 FAM8A1Q9UBU6 413 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 GOLGA8CPA6NN73 597 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 TTI1O43156 1089 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 PDE4DQ08499 809 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 TMEM132EQ6IEE7 984 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 NSMCE1Q8WV22 266 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 CDKL2Q92772 493 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 TMEM87BQ96K49 555 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 FNBP1Q96RU3 617 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 CTNND2Q9UQB3 1225 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 BICRAQ9NZM4 1560 aa12.36□□□□□ -0.43
LIMCH1-217ENST00000512946 TTC21BQ7Z4L5 1316 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 SPDYE3A6NKU9 549 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 RASGRF2O14827 1237 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 PPP1R12AO14974 1030 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 YWHAEP62258 255 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 RAD51AP2Q09MP3 1159 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 BIRC2Q13490 618 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 LARP6Q9BRS8 491 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 POLR3CQ9BUI4 534 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 USP26Q9BXU7 913 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TRIM15Q9C019 465 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 DCTPP1Q9H773 170 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TMOD4Q9NZQ9 345 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TOP2AP11388 1531 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 RASSF10A6NK89 507 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 STX1BP61266 288 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 LCA5Q86VQ0 697 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 SCHIP1Q9P0W5 487 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 PPP2R2CQ9Y2T4 447 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 NUB1Q9Y5A7 615 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 DNM2P50570 870 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 STRN3Q13033 797 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 MMEL1Q495T6 779 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 SLFNL1Q499Z3 407 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 CCDC184Q52MB2 194 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 KDM2BQ8NHM5 1336 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 KRIT1O00522 736 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 DEXIO95424 95 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TSPY3P0CV98 308 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TSPY8P0CW00 308 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 IL15P40933 162 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 CREB3L3Q68CJ9 461 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 TEKT1Q969V4 418 aa12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 UPF3AQ9H1J1 476 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-217ENST00000512946 IBTKQ9P2D0 1353 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 CFAP73A6NFT4 308 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 DCTN3O75935 186 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 HARSP12081 509 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 SMTNP53814 917 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 DCAF17Q5H9S7 520 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 HIBCHQ6NVY1 386 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 THAP12O43422 761 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 ATP1A2P50993 1020 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 KPNA2P52292 529 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 HAND2P61296 217 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 PPP1R2P3Q6NXS1 205 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 C16orf87Q6PH81 154 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 SRRM1Q8IYB3 904 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 SLF1Q9BQI6 1058 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 SPC25Q9HBM1 224 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 KIF21BO75037 1637 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 HGSO14964 777 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 DRP2Q13474 957 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 IQSEC3Q9UPP2 1182 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 TERF2Q15554 542 aa12.34□□□□□ -0.43
LIMCH1-217ENST00000512946 FRMD3A2A2Y4 597 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 PLCG2P16885 1265 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 RBM6P78332 1123 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 LDHAL6AQ6ZMR3 332 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 NUDCD3Q8IVD9 361 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 SH2D4AQ9H788 454 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 VAT1LQ9HCJ6 419 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 LMBRD1Q9NUN5 540 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 RALGAPBQ86X10 1494 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 MCF2LO15068 1137 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 CCDC159P0C7I6 412 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 RWDD2BP57060 319 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 C6orf118Q5T5N4 469 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 CAPRIN2Q6IMN6 1127 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 PDZD4Q76G19 769 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 MGARPQ8TDB4 240 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 BZW2Q9Y6E2 419 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 CCDC61Q9Y6R9 512 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 HNRNPCP07910 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 NBPF20Q3BBV1 942 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 TPCN1Q9ULQ1 816 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms