RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 C17orf99Q6UX52 265 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 TMEM179Q6ZVK1 233 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 ZNF589Q86UQ0 364 aaPredicted RBP16.69■□□□□ 0.26
DDX41-212ENST00000511040 ARHGAP39Q9C0H5 1083 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 DIAPH3Q9NSV4 1193 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 EMILIN3Q9NT22 766 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 SLC45A1Q9Y2W3 748 aa16.69■□□□□ 0.26
DDX41-212ENST00000511040 PRDM1O75626 825 aa16.68■□□□□ 0.26
DDX41-212ENST00000511040 USP17L2Q6R6M4 530 aa16.68■□□□□ 0.26
DDX41-212ENST00000511040 CWC27Q6UX04 472 aaKnown RBP16.68■□□□□ 0.26
DDX41-212ENST00000511040 SMCR8Q8TEV9 937 aaPredicted RBP16.68■□□□□ 0.26
DDX41-212ENST00000511040 MKNK2Q9HBH9 465 aa16.68■□□□□ 0.26
DDX41-212ENST00000511040 ZSWIM8A7E2V4 1837 aa16.68■□□□□ 0.26
DDX41-212ENST00000511040 A0A1W2PRG0 241 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 SLC34A2O95436 690 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 NEFLP07196 543 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 RASA1P20936 1047 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 OSBPP22059 807 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 PPARAQ07869 468 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 OTOP1Q7RTM1 612 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 CCDC17Q96LX7 622 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 ASCC2Q9H1I8 757 aaPredicted RBP16.67■□□□□ 0.26
DDX41-212ENST00000511040 TAOK2Q9UL54 1235 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 CCDC171Q6TFL3 1326 aa16.67■□□□□ 0.26
DDX41-212ENST00000511040 ROBO3Q96MS0 1386 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 BCRP11274 1271 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 LACTBP83111 547 aaPredicted RBP16.66■□□□□ 0.26
DDX41-212ENST00000511040 ATP2B2Q01814 1243 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 ICA1Q05084 483 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 CTDSPL2Q05D32 466 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 PABPC4Q13310 644 aaKnown RBP eCLIP16.66■□□□□ 0.26
DDX41-212ENST00000511040 CENPQQ7L2Z9 268 aaPredicted RBP16.66■□□□□ 0.26
DDX41-212ENST00000511040 TICAM2Q86XR7 235 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 SIAH1Q8IUQ4 282 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 KIAA1683Q9H0B3 1180 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 EFCC1Q9HA90 598 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 INCENPQ9NQS7 918 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 PNMA3Q9UL41 463 aa16.66■□□□□ 0.26
DDX41-212ENST00000511040 HSPD1P10809 573 aaKnown RBP16.65■□□□□ 0.26
DDX41-212ENST00000511040 CTGFP29279 349 aa16.65■□□□□ 0.26
DDX41-212ENST00000511040 IRX3P78415 501 aaPredicted RBP16.65■□□□□ 0.26
DDX41-212ENST00000511040 KIF22Q14807 665 aa16.65■□□□□ 0.26
DDX41-212ENST00000511040 ANKRD13CQ8N6S4 541 aa16.65■□□□□ 0.26
DDX41-212ENST00000511040 P2RX7Q99572 595 aaKnown RBP16.65■□□□□ 0.26
DDX41-212ENST00000511040 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.65■□□□□ 0.26
DDX41-212ENST00000511040 CCDC85CA6NKD9 419 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 HIP1O00291 1037 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 PEX10O60683 326 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 SLC3A2P08195 630 aaKnown RBP16.64■□□□□ 0.25
DDX41-212ENST00000511040 EEF2P13639 858 aaKnown RBP16.64■□□□□ 0.25
DDX41-212ENST00000511040 VCAM1P19320 739 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 PSMC4P43686 418 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 USP14P54578 494 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 PKN2Q16513 984 aaKnown RBP16.64■□□□□ 0.25
DDX41-212ENST00000511040 KIAA1755Q5JYT7 1200 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 ZNF444Q8N0Y2 327 aaPredicted RBP16.64■□□□□ 0.25
DDX41-212ENST00000511040 CCDC136Q96JN2 1154 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 C12orf42Q96LP6 360 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 ARHGEF10LQ9HCE6 1279 aa16.64■□□□□ 0.25
DDX41-212ENST00000511040 FMNL1O95466 1100 aaPredicted RBP16.63■□□□□ 0.25
DDX41-212ENST00000511040 FGAP02671 866 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 CENPBP07199 599 aaPredicted RBP16.63■□□□□ 0.25
DDX41-212ENST00000511040 HOXA7P31268 230 aaPredicted RBP16.63■□□□□ 0.25
DDX41-212ENST00000511040 PDE4BQ07343 736 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 ALX1Q15699 326 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 FAM47AQ5JRC9 791 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 FBXO46Q6PJ61 603 aaPredicted RBP16.63■□□□□ 0.25
DDX41-212ENST00000511040 TRIM47Q96LD4 638 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 RPAP3Q9H6T3 665 aaPredicted RBP16.63■□□□□ 0.25
DDX41-212ENST00000511040 KANSL2Q9H9L4 492 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 HPS5Q9UPZ3 1129 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 TACC3Q9Y6A5 838 aa16.63■□□□□ 0.25
DDX41-212ENST00000511040 HAND2P61296 217 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 HERVK_113P62684 666 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 SPICE1Q8N0Z3 855 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 IL25Q9H293 177 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 ZNF287Q9HBT7 754 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 PTPN22Q9Y2R2 807 aa16.62■□□□□ 0.25
DDX41-212ENST00000511040 USP17L15C9J2P7 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L13C9JLJ4 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L11C9JVI0 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L18D6R9N7 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L22D6RA61 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L17D6RBQ6 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L19D6RCP7 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L20D6RJB6 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 RAD21O60216 631 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 GCLCP48506 637 aaPredicted RBP16.61■□□□□ 0.25
DDX41-212ENST00000511040 MFAP1P55081 439 aaKnown RBP16.61■□□□□ 0.25
DDX41-212ENST00000511040 USP17L24Q0WX57 530 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 ARHGEF6Q15052 776 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 TMX2Q9Y320 296 aa16.61■□□□□ 0.25
DDX41-212ENST00000511040 TSPY3P0CV98 308 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 TSPY8P0CW00 308 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 CHMLP26374 656 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 FCGRTP55899 365 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 TFAP4Q01664 338 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 POTEEQ6S8J3 1075 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 CATSPERGQ6ZRH7 1159 aa16.6■□□□□ 0.25
DDX41-212ENST00000511040 PAGR1Q9BTK6 254 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms