RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZNF341Q9BYN7 854 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 EHD4Q9H223 541 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.93□□□□□ -0.5
NUP54-203ENST00000504173 HERC5Q9UII4 1024 aaKnown RBP11.93□□□□□ -0.5
NUP54-203ENST00000504173 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 FZD1Q9UP38 647 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 LAMA2P24043 3122 aaKnown RBP11.93□□□□□ -0.5
NUP54-203ENST00000504173 ZMYM6O95789 1325 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 SYNGAP1Q96PV0 1343 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 POTEB2H3BUK9 544 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 TBC1D12O60347 775 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 SLURP2P0DP57 97 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 IREB2P48200 963 aaKnown RBP11.92□□□□□ -0.5
NUP54-203ENST00000504173 PTH1RQ03431 593 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 EVX2Q03828 476 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 DYNLL2Q96FJ2 89 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 CLMNQ96JQ2 1002 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 LSG1Q9H089 658 aaKnown RBP11.92□□□□□ -0.5
NUP54-203ENST00000504173 CTNNA3Q9UI47 895 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 U3KPZ7 1027 aaPredicted RBP11.92□□□□□ -0.5
NUP54-203ENST00000504173 SIPA1L1O43166 1804 aa11.92□□□□□ -0.5
NUP54-203ENST00000504173 USP2O75604 605 aaPredicted RBP11.91□□□□□ -0.5
NUP54-203ENST00000504173 REC8O95072 547 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 SLC3A2P08195 630 aaKnown RBP11.91□□□□□ -0.5
NUP54-203ENST00000504173 GJA5P36382 358 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 HAND2P61296 217 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 MAP3K10Q02779 954 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 METTL16Q86W50 562 aaKnown RBP11.91□□□□□ -0.5
NUP54-203ENST00000504173 STK11IPQ8N1F8 1099 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 WRNIP1Q96S55 665 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 ZFYVE28Q9HCC9 887 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 SWAP70Q9UH65 585 aa11.91□□□□□ -0.5
NUP54-203ENST00000504173 RBM8AQ9Y5S9 174 aaKnown RBP11.91□□□□□ -0.5
NUP54-203ENST00000504173 SMIM22K7EJ46 135 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 TNFRSF10AO00220 468 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 ZNF213O14771 459 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 CCL5P13501 91 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 MAP3K9P80192 1104 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 LACTBP83111 547 aaPredicted RBP11.9□□□□□ -0.5
NUP54-203ENST00000504173 GABPAQ06546 454 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 IMMTQ16891 758 aaKnown RBP11.9□□□□□ -0.5
NUP54-203ENST00000504173 C16orf86Q6ZW13 317 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 SLC44A5Q8NCS7 719 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.9□□□□□ -0.5
NUP54-203ENST00000504173 MAP4K1Q92918 833 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 MS4A4AQ96JQ5 239 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 DNAJC18Q9H819 358 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 ROBO3Q96MS0 1386 aa11.9□□□□□ -0.5
NUP54-203ENST00000504173 EIF5BO60841 1220 aaKnown RBP11.89□□□□□ -0.51
NUP54-203ENST00000504173 INPP5BP32019 993 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 SHMT1P34896 483 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 CDK8P49336 464 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 CTDSPL2Q05D32 466 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 PDE4BQ07343 736 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 KIF22Q14807 665 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 TAF1CQ15572 869 aaPredicted RBP11.89□□□□□ -0.51
NUP54-203ENST00000504173 C8orf34Q49A92 452 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 ANKRD13AQ8IZ07 590 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 U2AF1L4Q8WU68 220 aaKnown RBP11.89□□□□□ -0.51
NUP54-203ENST00000504173 ARHGAP39Q9C0H5 1083 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 ZNF287Q9HBT7 754 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.89□□□□□ -0.51
NUP54-203ENST00000504173 ZNF112Q9UJU3 913 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 ANAPC4Q9UJX5 808 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 ARIH1Q9Y4X5 557 aaPredicted RBP11.89□□□□□ -0.51
NUP54-203ENST00000504173 CSADQ9Y600 493 aa11.89□□□□□ -0.51
NUP54-203ENST00000504173 LAMA4Q16363 1823 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 PHF20L1A8MW92 1017 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 GRK4P32298 578 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 VGLL4Q14135 290 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 CERKLQ49MI3 558 aaPredicted RBP11.88□□□□□ -0.51
NUP54-203ENST00000504173 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.88□□□□□ -0.51
NUP54-203ENST00000504173 ZKSCAN4Q969J2 545 aaPredicted RBP11.88□□□□□ -0.51
NUP54-203ENST00000504173 RNF208Q9H0X6 261 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 RNF41Q9H4P4 317 aaPredicted RBP11.88□□□□□ -0.51
NUP54-203ENST00000504173 MKNK2Q9HBH9 465 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 TOMM22Q9NS69 142 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
NUP54-203ENST00000504173 TLR2O60603 784 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 CTNND1O60716 968 aaKnown RBP11.87□□□□□ -0.51
NUP54-203ENST00000504173 PRDM1O75626 825 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 GDF11O95390 407 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 SGPL1O95470 568 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 CAP2P40123 477 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 RRP1BQ14684 758 aaKnown RBP11.87□□□□□ -0.51
NUP54-203ENST00000504173 RRP12Q5JTH9 1297 aaKnown RBP11.87□□□□□ -0.51
NUP54-203ENST00000504173 NOL9Q5SY16 702 aaKnown RBP11.87□□□□□ -0.51
NUP54-203ENST00000504173 AKNAD1Q5T1N1 836 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 RNF20Q5VTR2 975 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 TATDN1Q6P1N9 297 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 TBC1D10CQ8IV04 446 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 SCYL3Q8IZE3 742 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 ZNF444Q8N0Y2 327 aaPredicted RBP11.87□□□□□ -0.51
NUP54-203ENST00000504173 STAG1Q8WVM7 1258 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 SNX27Q96L92 541 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 NBPF3Q9H094 633 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 ELP3Q9H9T3 547 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 PICK1Q9NRD5 415 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 SRRDQ9UH36 339 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms