RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, human

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-222	ENST00000498810	COL2A1	P02458	1487 aa	Predicted RBP	12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	CCDC85C	A6NKD9	419 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	GPR25	O00155	361 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	GOLIM4	O00461	696 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	IGSF3	O75054	1194 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	FKTN	O75072	461 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	HLA-DOA	P06340	250 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	USP5	P45974	858 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	PPIL2	Q13356	520 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	CTU1	Q7Z7A3	348 aa	Known RBP	12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	CERS3	Q8IU89	383 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	ZFPM1	Q8IX07	1006 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	SIRT2	Q8IXJ6	389 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	MIGA1	Q8NAN2	632 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	PRR14	Q9BWN1	585 aa		12.93	□□□□□ -0.34
CDK11A-222	ENST00000498810	DDTL	A6NHG4	134 aa	Predicted RBP	12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	RHBDL3	P58872	404 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	PPAT	Q06203	517 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	GPIHBP1	Q8IV16	184 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	MAPKAPK5	Q8IW41	473 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	SCYL3	Q8IZE3	742 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	ZNF384	Q8TF68	577 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	TGFBRAP1	Q8WUH2	860 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	ZFYVE28	Q9HCC9	887 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	SIPA1L1	O43166	1804 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	ATRNL1	Q5VV63	1379 aa		12.92	□□□□□ -0.34
CDK11A-222	ENST00000498810	PHIP	Q8WWQ0	1821 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	FAM196B	A6NMK8	535 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	IRF6	O14896	467 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	SMARCA5	O60264	1052 aa	Predicted RBP	12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	CRHR2	Q13324	411 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	SLC4A8	Q2Y0W8	1093 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	NOL9	Q5SY16	702 aa	Known RBP	12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	BRI3BP	Q8WY22	251 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	DHX36	Q9H2U1	1008 aa	Known RBP	12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	BOLA2	Q9H3K6	86 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	ANTXR1	Q9H6X2	564 aa		12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	SAP30BP	Q9UHR5	308 aa	Known RBP	12.91	□□□□□ -0.34
CDK11A-222	ENST00000498810	FLT1	P17948	1338 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	MAGEB6P1	A0A0J9YX57	407 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	DYNLL1	P63167	89 aa	Known RBP	12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	SLC9C2	Q5TAH2	1124 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	TMED8	Q6PL24	325 aa	Predicted RBP	12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	GADL1	Q6ZQY3	521 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	SH3BP5L	Q7L8J4	393 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	ADGRA1	Q86SQ6	560 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	ERO1A	Q96HE7	468 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	CRBN	Q96SW2	442 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	PAG1	Q9NWQ8	432 aa		12.9	□□□□□ -0.34
CDK11A-222	ENST00000498810	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.9	□□□□□ -0.35
CDK11A-222	ENST00000498810	CTNND1	O60716	968 aa	Known RBP	12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	KIF22	Q14807	665 aa		12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	CFHR5	Q9BXR6	569 aa		12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	PI4KB	Q9UBF8	816 aa		12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	HERC5	Q9UII4	1024 aa	Known RBP	12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZNF112	Q9UJU3	913 aa		12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZHX2	Q9Y6X8	837 aa		12.89	□□□□□ -0.35
CDK11A-222	ENST00000498810	DDX60L	Q5H9U9	1706 aa	Known RBP	12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	TRIM75P	A6NK02	468 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	PDE6A	P16499	860 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	COPS2	P61201	443 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	ARHGEF6	Q15052	776 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	PKN2	Q16513	984 aa	Known RBP	12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	NOM1	Q5C9Z4	860 aa	Known RBP	12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZSCAN25	Q6NSZ9	544 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	AMOTL1	Q8IY63	956 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	FAM43A	Q8N2R8	423 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	DDRGK1	Q96HY6	314 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	TRIM17	Q9Y577	477 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZNF532	Q9HCE3	1301 aa		12.88	□□□□□ -0.35
CDK11A-222	ENST00000498810	LOC285556	D6RIA3	1793 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	BTBD19	C9JJ37	291 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	POLR3D	P05423	398 aa	Predicted RBP	12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	PTPRA	P18433	802 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	ATP5J	P18859	108 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	SP3	Q02447	781 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	FASTKD5	Q7L8L6	764 aa	Known RBP	12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	CD99L2	Q8TCZ2	262 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	EDC3	Q96F86	508 aa	Known RBP	12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	PARK7	Q99497	189 aa	Known RBP	12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	PTPN18	Q99952	460 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	R3HDML	Q9H3Y0	253 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	AS3MT	Q9HBK9	375 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZCCHC17	Q9NP64	241 aa	Known RBP	12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	ECHDC1	Q9NTX5	307 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	PALD1	Q9ULE6	856 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	PCDHB3	Q9Y5E6	796 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	MGAM	O43451	1857 aa		12.87	□□□□□ -0.35
CDK11A-222	ENST00000498810	ZSWIM8	A7E2V4	1837 aa		12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	PHF20L1	A8MW92	1017 aa		12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	PDHX	O00330	501 aa		12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	CXCL11	O14625	94 aa		12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	ACTN4	O43707	911 aa	Known RBP	12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	SLURP2	P0DP57	97 aa		12.86	□□□□□ -0.35
CDK11A-222	ENST00000498810	ANKRD23	Q86SG2	305 aa		12.86	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms