RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PALD1Q9ULE6 856 aa20.31■□□□□ 0.84
VIM-208ENST00000497849 TRIM43BA6NCK2 446 aa20.3■□□□□ 0.84
VIM-208ENST00000497849 MCAMP43121 646 aa20.3■□□□□ 0.84
VIM-208ENST00000497849 TRIM60Q495X7 471 aa20.3■□□□□ 0.84
VIM-208ENST00000497849 CRACR2BQ8N4Y2 399 aaPredicted RBP20.3■□□□□ 0.84
VIM-208ENST00000497849 USP38Q8NB14 1042 aa20.3■□□□□ 0.84
VIM-208ENST00000497849 TRIM43Q96BQ3 446 aaPredicted RBP20.3■□□□□ 0.84
VIM-208ENST00000497849 BTBD7Q9P203 1132 aa20.3■□□□□ 0.84
VIM-208ENST00000497849 USP17L15C9J2P7 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L13C9JLJ4 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L11C9JVI0 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L18D6R9N7 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L22D6RA61 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L17D6RBQ6 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L19D6RCP7 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L20D6RJB6 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 PPP4CP60510 307 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 USP17L24Q0WX57 530 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 CATSPERGQ6ZRH7 1159 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 ADGRA1Q86SQ6 560 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 ARRDC4Q8NCT1 418 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 LRP2BPQ9P2M1 347 aa20.29■□□□□ 0.84
VIM-208ENST00000497849 MYO5AQ9Y4I1 1855 aaKnown RBP20.28■□□□□ 0.84
VIM-208ENST00000497849 ZYXQ15942 572 aaKnown RBP20.28■□□□□ 0.84
VIM-208ENST00000497849 ALDH1L2Q3SY69 923 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 TJAP1Q5JTD0 557 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 ANO1Q5XXA6 986 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 LBX2Q6XYB7 198 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 MEIS3Q99687 375 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 NOL10Q9BSC4 688 aaKnown RBP20.28■□□□□ 0.84
VIM-208ENST00000497849 TRIM34Q9BYJ4 488 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 RAPGEFL1Q9UHV5 662 aa20.28■□□□□ 0.84
VIM-208ENST00000497849 TMEM265A0A087WTH1 108 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 TNFRSF10AO00220 468 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 BAG3O95817 575 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 GH2P01242 217 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 ITGB8P26012 769 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 IVNS1ABPQ9Y6Y0 642 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 ZNF236Q9UL36 1845 aa20.27■□□□□ 0.84
VIM-208ENST00000497849 KBTBD13C9JR72 458 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 ANP32CO43423 234 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 PLCG2P16885 1265 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 EPHB4P54760 987 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 GRIN2CQ14957 1233 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 GORABQ5T7V8 394 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 C1orf53Q5VUE5 145 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 DIEXFQ68CQ4 756 aaKnown RBP20.26■□□□□ 0.83
VIM-208ENST00000497849 NAA16Q6N069 864 aaPredicted RBP20.26■□□□□ 0.83
VIM-208ENST00000497849 FAM9BQ8IZU0 186 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 SAP30BPQ9UHR5 308 aaKnown RBP20.26■□□□□ 0.83
VIM-208ENST00000497849 HDAC5Q9UQL6 1122 aa20.26■□□□□ 0.83
VIM-208ENST00000497849 MYH1P12882 1939 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 SPDYE16A6NNV3 312 aaPredicted RBP20.25■□□□□ 0.83
VIM-208ENST00000497849 SRGAP3O43295 1099 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 VCAM1P19320 739 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 ADCYAP1R1P41586 468 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 FEZ1Q99689 392 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 SMC4Q9NTJ3 1288 aa20.25■□□□□ 0.83
VIM-208ENST00000497849 SEPT4O43236 478 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 MTX1Q13505 466 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 OLFML2BQ68BL8 750 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 TATDN1Q6P1N9 297 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 FERMT2Q96AC1 680 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 RNPC3Q96LT9 517 aaKnown RBP20.24■□□□□ 0.83
VIM-208ENST00000497849 SNRKQ9NRH2 765 aa20.24■□□□□ 0.83
VIM-208ENST00000497849 NCOR1O75376 2440 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 SMCHD1A6NHR9 2005 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 MYCNP04198 464 aaPredicted RBP20.23■□□□□ 0.83
VIM-208ENST00000497849 HLA-DOAP06340 250 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 TLE2Q04725 743 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 LRRC41Q15345 812 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 DPP9Q86TI2 863 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 ACER1Q8TDN7 264 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 KIAA1683Q9H0B3 1180 aa20.23■□□□□ 0.83
VIM-208ENST00000497849 NOB1Q9ULX3 412 aaKnown RBP20.23■□□□□ 0.83
VIM-208ENST00000497849 E9PSI1 815 aa20.22■□□□□ 0.83
VIM-208ENST00000497849 UQCRFS1P1P0C7P4 283 aa20.22■□□□□ 0.83
VIM-208ENST00000497849 ADORA2AP29274 412 aa20.22■□□□□ 0.83
VIM-208ENST00000497849 USP14P54578 494 aa20.22■□□□□ 0.83
VIM-208ENST00000497849 COBLO75128 1261 aa20.21■□□□□ 0.83
VIM-208ENST00000497849 DYNLL1P63167 89 aaKnown RBP20.21■□□□□ 0.83
VIM-208ENST00000497849 RAB3GAP1Q15042 981 aa20.21■□□□□ 0.83
VIM-208ENST00000497849 PRAMEF19Q5SWL8 479 aa20.21■□□□□ 0.83
VIM-208ENST00000497849 ATF7IPQ6VMQ6 1270 aa20.21■□□□□ 0.83
VIM-208ENST00000497849 MOV10L1Q9BXT6 1211 aaKnown RBP20.21■□□□□ 0.83
VIM-208ENST00000497849 RPAP3Q9H6T3 665 aaPredicted RBP20.21■□□□□ 0.83
VIM-208ENST00000497849 TACC3Q9Y6A5 838 aa20.21■□□□□ 0.83
VIM-208ENST00000497849 A0A0G2JMZ2 1700 aa20.2■□□□□ 0.82
VIM-208ENST00000497849 STRNO43815 780 aa20.2■□□□□ 0.82
VIM-208ENST00000497849 CYP2E1P05181 493 aaPredicted RBP20.2■□□□□ 0.82
VIM-208ENST00000497849 DNAJB2P25686 324 aa20.2■□□□□ 0.82
VIM-208ENST00000497849 SLFN5Q08AF3 891 aa20.2■□□□□ 0.82
VIM-208ENST00000497849 FAM47AQ5JRC9 791 aa20.2■□□□□ 0.82
VIM-208ENST00000497849 BDP1A6H8Y1 2624 aa20.19■□□□□ 0.82
VIM-208ENST00000497849 KIAA0355O15063 1070 aa20.19■□□□□ 0.82
VIM-208ENST00000497849 CLTBP09497 229 aa20.19■□□□□ 0.82
VIM-208ENST00000497849 API5Q9BZZ5 524 aaKnown RBP20.19■□□□□ 0.82
VIM-208ENST00000497849 PHF24Q9UPV7 400 aa20.19■□□□□ 0.82
VIM-208ENST00000497849 MYO9BQ13459 2157 aa20.18■□□□□ 0.82
VIM-208ENST00000497849 ZNFX1Q9P2E3 1918 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms