RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 RTN2O75298 545 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 NEBLO76041 1014 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 FXR1P51114 621 aaKnown RBP eCLIP14.6□□□□□ -0.07
VEGFA-215ENST00000497139 ICA1Q05084 483 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 NAA35Q5VZE5 725 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 CCDC13Q8IYE1 715 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 CPLX3Q8WVH0 158 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 CAVIN3Q969G5 261 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 EHD4Q9H223 541 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 PATL2C9JE40 543 aaKnown RBP14.6□□□□□ -0.07
VEGFA-215ENST00000497139 RCSD1Q6JBY9 416 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 SGSM3Q96HU1 749 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 ARHGAP23Q9P227 1491 aa14.6□□□□□ -0.07
VEGFA-215ENST00000497139 NDUFA10O95299 355 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 MYBL2P10244 700 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 PIP4K2AP48426 406 aaPredicted RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 SARNPP82979 210 aaKnown RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 SPAG1Q07617 926 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 FNBP4Q8N3X1 1017 aaPredicted RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 SLC40A1Q9NP59 571 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 BATF3Q9NR55 127 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 EPN1Q9Y6I3 576 aaPredicted RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 LRRC10BA6NIK2 292 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 CEBPAP49715 358 aaPredicted RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 CWF19L2Q2TBE0 894 aaKnown RBP14.59□□□□□ -0.07
VEGFA-215ENST00000497139 JAKMIP2Q96AA8 810 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 ALG1Q9BT22 464 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 MYH8P13535 1937 aa14.59□□□□□ -0.07
VEGFA-215ENST00000497139 LMO7Q8WWI1 1683 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 PPFIA3O75145 1194 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 LSP1P33241 339 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 KRT83P78385 493 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 GRIK3Q13003 919 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 CUL4BQ13620 913 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 WASHC4Q2M389 1173 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 KRT40Q6A162 431 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 SND1Q7KZF4 910 aaKnown RBP eCLIP14.58□□□□□ -0.074e-9■■□□□ 12.5
VEGFA-215ENST00000497139 PARP9Q8IXQ6 854 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 P3H4Q92791 437 aa14.58□□□□□ -0.07
VEGFA-215ENST00000497139 LIMA1Q9UHB6 759 aaKnown RBP14.58□□□□□ -0.07
VEGFA-215ENST00000497139 USP54Q70EL1 1684 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 BCL9LQ86UU0 1499 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 FOXN1O15353 648 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 ABL1P00519 1130 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 ATP1A1P05023 1023 aaKnown RBP14.58□□□□□ -0.08
VEGFA-215ENST00000497139 TLDC1Q6P9B6 456 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 DHX37Q8IY37 1157 aaKnown RBP14.58□□□□□ -0.08
VEGFA-215ENST00000497139 MAB21L3Q8N8X9 362 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 CAGE1Q8TC20 777 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 ZNF473Q8WTR7 871 aaKnown RBP14.58□□□□□ -0.08
VEGFA-215ENST00000497139 BSDC1Q9NW68 430 aaPredicted RBP14.58□□□□□ -0.08
VEGFA-215ENST00000497139 GUCA1BQ9UMX6 200 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 CPDO75976 1380 aa14.58□□□□□ -0.08
VEGFA-215ENST00000497139 PRC1O43663 620 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 KRT86O43790 486 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PTPREP23469 700 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PDCLQ13371 301 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 NBPF9Q3BBW0 867 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 TTMPQ5BVD1 217 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 C6orf89Q6UWU4 347 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 MB21D2Q8IYB1 491 aaPredicted RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 SLF1Q9BQI6 1058 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 EID1Q9Y6B2 187 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PARP4Q9UKK3 1724 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 MST1RQ04912 1400 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PPP1R37O75864 691 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 FAM107AO95990 144 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PAX7P23759 505 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 CLNS1AP54105 237 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 ACTN4O43707 911 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 TRIM29Q14134 588 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 PTGISQ16647 500 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 IMMTQ16891 758 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 DDX46Q7L014 1031 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 CD302Q8IX05 232 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 NUP88Q99567 741 aaPredicted RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 DDX20Q9UHI6 824 aaKnown RBP14.57□□□□□ -0.08
VEGFA-215ENST00000497139 SERTAD1Q9UHV2 236 aa14.57□□□□□ -0.08
VEGFA-215ENST00000497139 MYO5AQ9Y4I1 1855 aaKnown RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 ANKRD33BA6NCL7 494 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 CCDC121Q6ZUS5 278 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 CHST3Q7LGC8 479 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 RNF217Q8TC41 542 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 PAG1Q9NWQ8 432 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 REXO2Q9Y3B8 237 aaKnown RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 TBX22Q9Y458 520 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 ECM29Q5VYK3 1845 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 SH2B2O14492 632 aaPredicted RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 POLR2DO15514 142 aaKnown RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 PRLRP16471 622 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 RNF187Q5TA31 235 aaPredicted RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 CYB5D1Q6P9G0 228 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 ARMC2Q8NEN0 867 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 HOOK2Q96ED9 719 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 GDAP1L1Q96MZ0 367 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 FBXO2Q9UK22 296 aaPredicted RBP14.56□□□□□ -0.08
VEGFA-215ENST00000497139 HEG1Q9ULI3 1381 aa14.56□□□□□ -0.08
VEGFA-215ENST00000497139 MAST3O60307 1309 aa14.55□□□□□ -0.08
VEGFA-215ENST00000497139 TFCP2Q12800 502 aa14.55□□□□□ -0.08
VEGFA-215ENST00000497139 CCDC122Q5T0U0 273 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms