RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MYH6P13533 1939 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 KLHL10Q6JEL2 608 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 BARGINQ6ZT62 677 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 CCDC34Q96HJ3 373 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 SETDB2Q96T68 719 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 IRX2Q9BZI1 471 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 ZCCHC17Q9NP64 241 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 TUBE1Q9UJT0 475 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 FBXO2Q9UK22 296 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 CASZ1Q86V15 1759 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 VEGFAP15692 232 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 CLCN6P51797 869 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 NSUN4Q96CB9 384 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 AKAP17AQ02040 695 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 PKN1Q16512 942 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 MTMR7Q9Y216 660 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 RREB1Q92766 1687 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 LAMB2P55268 1798 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 A0A0U1RQJ8 604 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 NEMFO60524 1076 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 GYS2P54840 703 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 ATRIPQ8WXE1 791 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 NLRP3Q96P20 1036 aa18.9■□□□□ 0.62
CCDC88B-210ENST00000494566 ADAMTS3O15072 1205 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 CDK11BP21127 795 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 STX17P56962 302 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 GSDMDP57764 484 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 TPM4P67936 248 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 MNS1Q8NEH6 495 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 STAMQ92783 540 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 TIGD1Q96MW7 591 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 CSRNP2Q9H175 543 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 COL5A3P25940 1745 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 CCDC196A0A1B0GTZ2 297 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 TFRCP02786 760 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 TMTC2Q8N394 836 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 BPIFA3Q9BQP9 254 aa18.89■□□□□ 0.61
CCDC88B-210ENST00000494566 HIBADHP31937 336 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 FOXP1Q9H334 677 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 A0A1B0GUL6 1792 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 ZPR1O75312 459 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 TOP1P11387 765 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 MTF1Q14872 753 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 TEX35Q5T0J7 233 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 FBXO33Q7Z6M2 555 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 CATIPQ7Z7H3 387 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 EPSTI1Q96J88 318 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 ANAPC4Q9UJX5 808 aa18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 MORC2Q9Y6X9 1032 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-210ENST00000494566 PTPREP23469 700 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 RILPL1Q5EBL4 403 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.87■□□□□ 0.615e-7■■□□□ 13.8
CCDC88B-210ENST00000494566 MYL5Q02045 173 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 TERF2Q15554 542 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 IQCA1Q86XH1 822 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 OSBPL5Q9H0X9 879 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 DCP1AQ9NPI6 582 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 A0A087X0B3 334 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 USP17L8P0C7I0 530 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 GNG11P61952 73 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 FUT2Q10981 343 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 TROAPQ12815 778 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 ZNF174Q15697 407 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 UBXN4Q92575 508 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 MAN1B1Q9UKM7 699 aa18.87■□□□□ 0.61
CCDC88B-210ENST00000494566 DUOX1Q9NRD9 1551 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 NID2Q14112 1375 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 AFMP43652 599 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 MDM2Q00987 491 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 FMR1Q06787 632 aaKnown RBP eCLIP18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 POSTNQ15063 836 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 OLFM4Q6UX06 510 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 DHX58Q96C10 678 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 WDR24Q96S15 920 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 FAM237AA0A1B0GTK4 181 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 GRIK5Q16478 980 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 TOGARAM2Q6ZUX3 1019 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 SMYD4Q8IYR2 804 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 NARFQ9UHQ1 456 aa18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 CCNL1Q9UK58 526 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-210ENST00000494566 SRBD1Q8N5C6 995 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 ARHGEF1Q92888 912 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 BRIP1Q9BX63 1249 aa18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 RNF26Q9BY78 433 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 CCDC150Q8NCX0 1101 aa18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 DYNLL2Q96FJ2 89 aa18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 LZTFL1Q9NQ48 299 aa18.85■□□□□ 0.61
CCDC88B-210ENST00000494566 KIF20AO95235 890 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 DIXDC1Q155Q3 683 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 SAMSN1Q9NSI8 373 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 MCM9Q9NXL9 1143 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 SCN7AQ01118 1682 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 IKBKBO14920 756 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 NFIXQ14938 502 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 INTS13Q9NVM9 706 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 ANKIB1Q9P2G1 1089 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 SRCAPQ6ZRS2 3230 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 NRDCO43847 1150 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 KRT2P35908 639 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms