RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 EVX2Q03828 476 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 SEPT2Q15019 361 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 IFNL3Q8IZI9 196 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 NAPBQ9H115 298 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 HPS5Q9UPZ3 1129 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 MGAMO43451 1857 aa17.05■□□□□ 0.32
BRCA1-218ENST00000489037 ADGRA2Q96PE1 1338 aa17.05■□□□□ 0.32
BRCA1-218ENST00000489037 FMNL1O95466 1100 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-218ENST00000489037 ZYXQ15942 572 aaKnown RBP17.05■□□□□ 0.32
BRCA1-218ENST00000489037 SH2D4AQ9H788 454 aa17.05■□□□□ 0.32
BRCA1-218ENST00000489037 ARHGEF10LQ9HCE6 1279 aa17.05■□□□□ 0.32
BRCA1-218ENST00000489037 PTPN22Q9Y2R2 807 aa17.05■□□□□ 0.32
BRCA1-218ENST00000489037 HIP1O00291 1037 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 ECM2O94769 699 aaPredicted RBP17.04■□□□□ 0.32
BRCA1-218ENST00000489037 BCRP11274 1271 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 HOXA7P31268 230 aaPredicted RBP17.04■□□□□ 0.32
BRCA1-218ENST00000489037 PSMC4P43686 418 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 MFAP1P55081 439 aaKnown RBP17.04■□□□□ 0.32
BRCA1-218ENST00000489037 PRMT2P55345 433 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 FCGRTP55899 365 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 MCMDC2Q4G0Z9 681 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 STK11IPQ8N1F8 1099 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 KIAA1683Q9H0B3 1180 aa17.04■□□□□ 0.32
BRCA1-218ENST00000489037 ASCC2Q9H1I8 757 aaPredicted RBP17.04■□□□□ 0.32
BRCA1-218ENST00000489037 AKR1B1P15121 316 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 GUCY1A2P33402 732 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 PDE4BQ07343 736 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 ZNF444Q8N0Y2 327 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-218ENST00000489037 ANKRD13CQ8N6S4 541 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 ACER1Q8TDN7 264 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 GTF3C2Q8WUA4 911 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-218ENST00000489037 C12orf42Q96LP6 360 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 EPB41L4AQ9HCS5 686 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-218ENST00000489037 EMILIN3Q9NT22 766 aa17.03■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L15C9J2P7 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L13C9JLJ4 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L11C9JVI0 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L18D6R9N7 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L22D6RA61 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L17D6RBQ6 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L19D6RCP7 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L20D6RJB6 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 ICA1Q05084 483 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 USP17L24Q0WX57 530 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 FAM110CQ1W6H9 321 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 CCDC129Q6ZRS4 1044 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 ARHGAP39Q9C0H5 1083 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 KANSL2Q9H9L4 492 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 DIAPH3Q9NSV4 1193 aa17.02■□□□□ 0.32
BRCA1-218ENST00000489037 SDSP20132 328 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 ATP2B2Q01814 1243 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 NMIQ13287 307 aaPredicted RBP17.01■□□□□ 0.31
BRCA1-218ENST00000489037 NBPF11Q86T75 865 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 FAM227BQ96M60 508 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 P2RX7Q99572 595 aaKnown RBP17.01■□□□□ 0.31
BRCA1-218ENST00000489037 DOCK3Q8IZD9 2030 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 ROBO3Q96MS0 1386 aa17.01■□□□□ 0.31
BRCA1-218ENST00000489037 ZSWIM8A7E2V4 1837 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 SMIM22K7EJ46 135 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 HERVK_113P62684 666 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 PPARAQ07869 468 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 RAET1EQ8TD07 263 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 TRIM47Q96LD4 638 aa17■□□□□ 0.31
BRCA1-218ENST00000489037 A0A0D9SFI3 127 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 TNPO2O14787 897 aaKnown RBP16.99■□□□□ 0.31
BRCA1-218ENST00000489037 VCAM1P19320 739 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 SLC9C1Q4G0N8 1177 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 CATSPERGQ6ZRH7 1159 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 CCAR1Q8IX12 1150 aaKnown RBP16.99■□□□□ 0.31
BRCA1-218ENST00000489037 LPAR1Q92633 364 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 COA7Q96BR5 231 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 RPAP3Q9H6T3 665 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-218ENST00000489037 SRRDQ9UH36 339 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 TMX2Q9Y320 296 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 PTCH2Q9Y6C5 1203 aa16.99■□□□□ 0.31
BRCA1-218ENST00000489037 CCDC171Q6TFL3 1326 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 MYPNQ86TC9 1320 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 MYH4Q9Y623 1939 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 A0A1W2PRG0 241 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 NEFLP07196 543 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 EEF2P13639 858 aaKnown RBP16.98■□□□□ 0.31
BRCA1-218ENST00000489037 RASA1P20936 1047 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 PDE4AP27815 886 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 CAP1Q01518 475 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 ALX1Q15699 326 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 TTC22Q5TAA0 569 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 GPRC5AQ8NFJ5 357 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 TANGO6Q9C0B7 1094 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 GOPCQ9HD26 462 aa16.98■□□□□ 0.31
BRCA1-218ENST00000489037 RAD21O60216 631 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 PRDM1O75626 825 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 TSPY3P0CV98 308 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 TSPY8P0CW00 308 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 VPS53Q5VIR6 699 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 CWC27Q6UX04 472 aaKnown RBP16.97■□□□□ 0.31
BRCA1-218ENST00000489037 PAGR1Q9BTK6 254 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 VCPKMTQ9H867 229 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 CWC22Q9HCG8 908 aaKnown RBP16.97■□□□□ 0.31
BRCA1-218ENST00000489037 HOXC10Q9NYD6 342 aa16.97■□□□□ 0.31
BRCA1-218ENST00000489037 MORF4L1Q9UBU8 362 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms