RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CYP2C8P10632 490 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 RLBP1P12271 317 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 GJA8P48165 433 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 NFIAQ12857 509 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 AAMPQ13685 434 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 DIXDC1Q155Q3 683 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 C20orf194Q5TEA3 1177 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 CDC42EP5Q6NZY7 148 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 MEIS3Q99687 375 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 HTATIP2Q9BUP3 242 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 MRIQ9BWK5 157 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 SLC6A16Q9GZN6 736 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 UNC93B1Q9H1C4 597 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 KCNH4Q9UQ05 1017 aa10.74□□□□□ -0.69
USP4-213ENST00000488520 FRMPD3Q5JV73 1810 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 IFIT1P09914 478 aaKnown RBP10.73□□□□□ -0.69
USP4-213ENST00000488520 UBXN2AP68543 259 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 MOGSQ13724 837 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 RABL6Q3YEC7 729 aaPredicted RBP10.73□□□□□ -0.69
USP4-213ENST00000488520 ZFPM1Q8IX07 1006 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 THAP11Q96EK4 314 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 SLC24A3Q9HC58 644 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 USP40Q9NVE5 1235 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 ZNF112Q9UJU3 913 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 SUGT1Q9Y2Z0 365 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 DAGLAQ9Y4D2 1042 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 LRRFIP2Q9Y608 721 aaKnown RBP10.73□□□□□ -0.69
USP4-213ENST00000488520 UTYO14607 1347 aa10.73□□□□□ -0.69
USP4-213ENST00000488520 LOC285556D6RIA3 1793 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 RNF223E7ERA6 249 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 FARP2O94887 1054 aaPredicted RBP10.72□□□□□ -0.69
USP4-213ENST00000488520 SLURP2P0DP57 97 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 BCRP11274 1271 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 SLC5A1P13866 664 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 ELNP15502 786 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 FGFR2P21802 821 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 PRDX5P30044 214 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 FCGRTP55899 365 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 PUM3Q15397 648 aaKnown RBP10.72□□□□□ -0.69
USP4-213ENST00000488520 GPAT2Q6NUI2 795 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 GADL1Q6ZQY3 521 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 UBE2Q1Q7Z7E8 422 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 PARP9Q8IXQ6 854 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 WDR66Q8TBY9 1149 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 U2AF1L4Q8WU68 220 aaKnown RBP10.72□□□□□ -0.69
USP4-213ENST00000488520 CRBNQ96SW2 442 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 PARK7Q99497 189 aaKnown RBP10.72□□□□□ -0.69
USP4-213ENST00000488520 PRKD2Q9BZL6 878 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 LAMA3Q16787 3333 aa10.72□□□□□ -0.69
USP4-213ENST00000488520 HOXA2O43364 376 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 ADCY3O60266 1144 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 HMMRO75330 724 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 SGPL1O95470 568 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 TFRCP02786 760 aaKnown RBP10.71□□□□□ -0.69
USP4-213ENST00000488520 IRX6P78412 446 aaPredicted RBP10.71□□□□□ -0.69
USP4-213ENST00000488520 RPAP2Q8IXW5 612 aaPredicted RBP10.71□□□□□ -0.69
USP4-213ENST00000488520 SLC17A8Q8NDX2 589 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 SIL1Q9H173 461 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 NR2E3Q9Y5X4 410 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 ZHX2Q9Y6X8 837 aa10.71□□□□□ -0.69
USP4-213ENST00000488520 MYH1P12882 1939 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 FOCADQ5VW36 1801 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 EYA2O00167 538 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 DLL1O00548 723 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 CXCL11O14625 94 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 SRGAP3O43295 1099 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 INHAP05111 366 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 LDHBP07195 334 aaKnown RBP10.7□□□□□ -0.7
USP4-213ENST00000488520 FLT3LGP49771 235 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 ATP8B2P98198 1209 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 G3BP1Q13283 466 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP4-213ENST00000488520 Q3C1V9 767 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 NOL9Q5SY16 702 aaKnown RBP10.7□□□□□ -0.7
USP4-213ENST00000488520 BRICD5Q6PL45 260 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 ZSCAN29Q8IWY8 852 aaPredicted RBP10.7□□□□□ -0.7
USP4-213ENST00000488520 ANKLE1Q8NAG6 615 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 LPIN2Q92539 896 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 DEFB118Q96PH6 123 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 PRO3102Q9H379 93 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 ZBTB40Q9NUA8 1239 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.7□□□□□ -0.7
USP4-213ENST00000488520 STAP2Q9UGK3 403 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 V9GY48 417 aaPredicted RBP10.7□□□□□ -0.7
USP4-213ENST00000488520 A0A0C4DFX4 3053 aa10.7□□□□□ -0.7
USP4-213ENST00000488520 PHF20L1A8MW92 1017 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 SOX1O00570 391 aaPredicted RBP10.69□□□□□ -0.7
USP4-213ENST00000488520 TNPO2O14787 897 aaKnown RBP10.69□□□□□ -0.7
USP4-213ENST00000488520 RFX5P48382 616 aaPredicted RBP10.69□□□□□ -0.7
USP4-213ENST00000488520 RGS3P49796 1198 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 OS9Q13438 667 aaPredicted RBP10.69□□□□□ -0.7
USP4-213ENST00000488520 RNF19BQ6ZMZ0 732 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 CCDC84Q86UT8 332 aaPredicted RBP10.69□□□□□ -0.7
USP4-213ENST00000488520 SCYL3Q8IZE3 742 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 C1orf115Q9H7X2 142 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 PICK1Q9NRD5 415 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 SIPA1L1O43166 1804 aa10.69□□□□□ -0.7
USP4-213ENST00000488520 ZNFX1Q9P2E3 1918 aaKnown RBP10.68□□□□□ -0.7
USP4-213ENST00000488520 DNAH12Q6ZR08 3092 aa10.68□□□□□ -0.7
USP4-213ENST00000488520 A0A0G2JLL6 359 aaPredicted RBP10.68□□□□□ -0.7
USP4-213ENST00000488520 TRIM75PA6NK02 468 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms