RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CSADQ9Y600 493 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 UNCXA6NJT0 531 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 FAM196BA6NMK8 535 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 EPB41L2O43491 1005 aaKnown RBP12.2□□□□□ -0.46
SKA1-204ENST00000488454 CTNND1O60716 968 aaKnown RBP12.2□□□□□ -0.46
SKA1-204ENST00000488454 PCP11498 1178 aaKnown RBP12.2□□□□□ -0.46
SKA1-204ENST00000488454 C1QTNF8P60827 252 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 CTDSPL2Q05D32 466 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 GABPAQ06546 454 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 MFSD6Q6ZSS7 791 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 C16orf86Q6ZW13 317 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 SLC10A4Q96EP9 437 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 CCDC17Q96LX7 622 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 CABP5Q9NP86 173 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 PICK1Q9NRD5 415 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 ZNF112Q9UJU3 913 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 FZD1Q9UP38 647 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 ARIH1Q9Y4X5 557 aaPredicted RBP12.2□□□□□ -0.46
SKA1-204ENST00000488454 ECM29Q5VYK3 1845 aa12.2□□□□□ -0.46
SKA1-204ENST00000488454 PHF20L1A8MW92 1017 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 MPHOSPH10O00566 681 aaKnown RBP12.19□□□□□ -0.46
SKA1-204ENST00000488454 SLURP2P0DP57 97 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 ZKSCAN1P17029 563 aaPredicted RBP12.19□□□□□ -0.46
SKA1-204ENST00000488454 HUNKP57058 714 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 TRDNQ13061 729 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 MAP3K11Q16584 847 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 AKNAD1Q5T1N1 836 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 TATDN1Q6P1N9 297 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 MOB2Q70IA6 237 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 UPF2Q9HAU5 1272 aaKnown RBP12.19□□□□□ -0.46
SKA1-204ENST00000488454 GINM1Q9NU53 330 aa12.19□□□□□ -0.46
SKA1-204ENST00000488454 POLR2AP24928 1970 aaKnown RBP12.19□□□□□ -0.46
SKA1-204ENST00000488454 PRDM1O75626 825 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 CYP21A2P08686 494 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 INPP5BP32019 993 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 SHMT1P34896 483 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 CAP2P40123 477 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 FOSBP53539 338 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 NECTIN1Q15223 517 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 ABCB5Q2M3G0 1257 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 C8orf34Q49A92 452 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 RRP12Q5JTH9 1297 aaKnown RBP12.18□□□□□ -0.46
SKA1-204ENST00000488454 PPP4R3BQ5MIZ7 849 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 LDLRAD1Q5T700 205 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 CREB3L3Q68CJ9 461 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 SLC44A5Q8NCS7 719 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.18□□□□□ -0.46
SKA1-204ENST00000488454 STAG1Q8WVM7 1258 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 ZKSCAN4Q969J2 545 aaPredicted RBP12.18□□□□□ -0.46
SKA1-204ENST00000488454 DNAJC18Q9H819 358 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 CNNM2Q9H8M5 875 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 TLL2Q9Y6L7 1015 aa12.18□□□□□ -0.46
SKA1-204ENST00000488454 TSPY2A6NKD2 308 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 SMIM22K7EJ46 135 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 SLC27A2O14975 620 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 RANBP6O60518 1105 aaKnown RBP12.17□□□□□ -0.46
SKA1-204ENST00000488454 GDF11O95390 407 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ASNSP08243 561 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 TSPY3P0CV98 308 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 TSPY8P0CW00 308 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 NT5C2P49902 561 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ZNF157P51786 506 aaPredicted RBP12.17□□□□□ -0.46
SKA1-204ENST00000488454 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.17□□□□□ -0.46
SKA1-204ENST00000488454 SAPCD2Q86UD0 394 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 SCYL3Q8IZE3 742 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ZNF454Q8N9F8 522 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ESR2Q92731 530 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 USP26Q9BXU7 913 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 KRT23Q9C075 422 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ROBO3Q96MS0 1386 aa12.17□□□□□ -0.46
SKA1-204ENST00000488454 ORC4O43929 436 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 GH2P01242 217 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 HSPA4P34932 840 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 TFAP4Q01664 338 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 VGLL4Q14135 290 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 KRT32Q14532 448 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 RAB3GAP1Q15042 981 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 DEFB115Q30KQ5 88 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 NOL9Q5SY16 702 aaKnown RBP12.16□□□□□ -0.46
SKA1-204ENST00000488454 RGMBQ6NW40 437 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 POTEEQ6S8J3 1075 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 TMEM179Q6ZVK1 233 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 RALYLQ86SE5 291 aaKnown RBP12.16□□□□□ -0.46
SKA1-204ENST00000488454 TBC1D10CQ8IV04 446 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 ELP3Q9H9T3 547 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 INCENPQ9NQS7 918 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 SSC5DA1L4H1 1573 aa12.16□□□□□ -0.46
SKA1-204ENST00000488454 USP17L5A8MUK1 530 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 E7EWF7 191 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 FGRP09769 529 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 AKR1B1P15121 316 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 RASA1P20936 1047 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 PBX2P40425 430 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 RRP1BQ14684 758 aaKnown RBP12.15□□□□□ -0.46
SKA1-204ENST00000488454 FAM47AQ5JRC9 791 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 ERO1BQ86YB8 467 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 NCOA7Q8NI08 942 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 KCNV2Q8TDN2 545 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 CCDC102AQ96A19 550 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 HHIPL1Q96JK4 782 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms