RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 IFNL3Q8IZI9 196 aa17.91■□□□□ 0.46
TRIM54-204ENST00000488321 CCDC17Q96LX7 622 aa17.91■□□□□ 0.46
TRIM54-204ENST00000488321 ASCC2Q9H1I8 757 aaPredicted RBP17.91■□□□□ 0.46
TRIM54-204ENST00000488321 EMILIN3Q9NT22 766 aa17.91■□□□□ 0.46
TRIM54-204ENST00000488321 DDX60LQ5H9U9 1706 aaKnown RBP17.91■□□□□ 0.46
TRIM54-204ENST00000488321 ANKRD13CQ8N6S4 541 aa17.9■□□□□ 0.46
TRIM54-204ENST00000488321 KIAA1683Q9H0B3 1180 aa17.9■□□□□ 0.46
TRIM54-204ENST00000488321 NAPBQ9H115 298 aa17.9■□□□□ 0.46
TRIM54-204ENST00000488321 OSBPL3Q9H4L5 887 aa17.9■□□□□ 0.46
TRIM54-204ENST00000488321 MKNK2Q9HBH9 465 aa17.9■□□□□ 0.46
TRIM54-204ENST00000488321 FCGRTP55899 365 aa17.89■□□□□ 0.45
TRIM54-204ENST00000488321 CLEC10AQ8IUN9 316 aa17.89■□□□□ 0.45
TRIM54-204ENST00000488321 TRIM47Q96LD4 638 aa17.89■□□□□ 0.45
TRIM54-204ENST00000488321 FAM227BQ96M60 508 aa17.89■□□□□ 0.45
TRIM54-204ENST00000488321 HELLSQ9NRZ9 838 aa17.89■□□□□ 0.45
TRIM54-204ENST00000488321 MYH1P12882 1939 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 A0A0D9SFI3 127 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 GNRH1P01148 92 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 CTGFP29279 349 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 HOXA7P31268 230 aaPredicted RBP17.88■□□□□ 0.45
TRIM54-204ENST00000488321 GCLCP48506 637 aaPredicted RBP17.88■□□□□ 0.45
TRIM54-204ENST00000488321 ATP2B2Q01814 1243 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 ICA1Q05084 483 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 NMIQ13287 307 aaPredicted RBP17.88■□□□□ 0.45
TRIM54-204ENST00000488321 P2RX7Q99572 595 aaKnown RBP17.88■□□□□ 0.45
TRIM54-204ENST00000488321 PTCH2Q9Y6C5 1203 aa17.88■□□□□ 0.45
TRIM54-204ENST00000488321 A0A1W2PRG0 241 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 VCAM1P19320 739 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 PDE4AP27815 886 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 HOXD10P28358 340 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 SOX10P56693 466 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 FAM110CQ1W6H9 321 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 MCMDC2Q4G0Z9 681 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 C12orf42Q96LP6 360 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 ZNF287Q9HBT7 754 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 ARHGEF10LQ9HCE6 1279 aa17.87■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L15C9J2P7 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L13C9JLJ4 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L11C9JVI0 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L18D6R9N7 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L22D6RA61 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L17D6RBQ6 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L19D6RCP7 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L20D6RJB6 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 TNPO2O14787 897 aaKnown RBP17.86■□□□□ 0.45
TRIM54-204ENST00000488321 PRDM1O75626 825 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 SLC3A2P08195 630 aaKnown RBP17.86■□□□□ 0.45
TRIM54-204ENST00000488321 SDSP20132 328 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 HERVK_113P62684 666 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 USP17L24Q0WX57 530 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 VPS53Q5VIR6 699 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 TICAM2Q86XR7 235 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 SH2D4AQ9H788 454 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 PHIPQ8WWQ0 1821 aa17.86■□□□□ 0.45
TRIM54-204ENST00000488321 RASA1P20936 1047 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 PRMT2P55345 433 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 PPARAQ07869 468 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 SLC9C1Q4G0N8 1177 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 MYPNQ86TC9 1320 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 ZNF444Q8N0Y2 327 aaPredicted RBP17.85■□□□□ 0.45
TRIM54-204ENST00000488321 ROBO3Q96MS0 1386 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 RPAP3Q9H6T3 665 aaPredicted RBP17.85■□□□□ 0.45
TRIM54-204ENST00000488321 KANSL2Q9H9L4 492 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 DIAPH3Q9NSV4 1193 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 SRRDQ9UH36 339 aa17.85■□□□□ 0.45
TRIM54-204ENST00000488321 ATAD5Q96QE3 1844 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 RAD21O60216 631 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 EEF2P13639 858 aaKnown RBP17.84■□□□□ 0.45
TRIM54-204ENST00000488321 PRKCZQ05513 592 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 PDE4BQ07343 736 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 RAET1EQ8TD07 263 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 PAGR1Q9BTK6 254 aa17.84■□□□□ 0.45
TRIM54-204ENST00000488321 CCDC171Q6TFL3 1326 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 MYH7P12883 1935 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 FOXP2O15409 715 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 PEX10O60683 326 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 CWC27Q6UX04 472 aaKnown RBP17.83■□□□□ 0.44
TRIM54-204ENST00000488321 CATSPERGQ6ZRH7 1159 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 NBPF11Q86T75 865 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 ZNF589Q86UQ0 364 aaPredicted RBP17.83■□□□□ 0.44
TRIM54-204ENST00000488321 SIAH1Q8IUQ4 282 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 SPICE1Q8N0Z3 855 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 TANGO6Q9C0B7 1094 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 TMX2Q9Y320 296 aa17.83■□□□□ 0.44
TRIM54-204ENST00000488321 LOC285556D6RIA3 1793 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 HIP1O00291 1037 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 MYCP01106 439 aaPredicted RBP17.82■□□□□ 0.44
TRIM54-204ENST00000488321 MFAP1P55081 439 aaKnown RBP17.82■□□□□ 0.44
TRIM54-204ENST00000488321 CTDSPL2Q05D32 466 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 TTC22Q5TAA0 569 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 CCAR1Q8IX12 1150 aaKnown RBP17.82■□□□□ 0.44
TRIM54-204ENST00000488321 GPRC5AQ8NFJ5 357 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 SH3TC2Q8TF17 1288 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 GTF3C2Q8WUA4 911 aaPredicted RBP17.82■□□□□ 0.44
TRIM54-204ENST00000488321 COA7Q96BR5 231 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.82■□□□□ 0.44
TRIM54-204ENST00000488321 VCPKMTQ9H867 229 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 TXNRD2Q9NNW7 524 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 RBPJLQ9UBG7 517 aa17.82■□□□□ 0.44
TRIM54-204ENST00000488321 MORF4L1Q9UBU8 362 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms