RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 ERVK-9P63128 1117 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 ERVK-24P63145 666 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 MDM2Q00987 491 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 ZYXQ15942 572 aaKnown RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 LRIT3Q3SXY7 679 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 MAP3K21Q5TCX8 1036 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 WDR78Q5VTH9 848 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 GPR153Q6NV75 609 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 GPR142Q7Z601 462 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 PLEKHH3Q7Z736 793 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 TRMT44Q8IYL2 757 aaKnown RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 PORCNQ9H237 461 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 DNAJC18Q9H819 358 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 ZBTB47Q9UFB7 747 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 ZBTB21Q9ULJ3 1066 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 NDUFB9Q9Y6M9 179 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 DDX60LQ5H9U9 1706 aaKnown RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 MAST2Q6P0Q8 1798 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 FLT1P17948 1338 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 ATAD5Q96QE3 1844 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 HLA-DOAP06340 250 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 ZAP70P43403 619 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 MAP3K12Q12852 859 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 LRRC26Q2I0M4 334 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 ADGRA1Q86SQ6 560 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 EMILIN3Q9NT22 766 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 ECHDC1Q9NTX5 307 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 MTMR10Q9NXD2 777 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 STXBP5LQ9Y2K9 1186 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 TTC41PQ6P2S7 1318 aa12.09□□□□□ -0.47
CPSF4-213ENST00000484112 PPP4CP60510 307 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 DYNLL1P63167 89 aaKnown RBP12.08□□□□□ -0.48
CPSF4-213ENST00000484112 MORN1Q5T089 497 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 LHX8Q68G74 356 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L2Q6R6M4 530 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 USP6NLQ92738 828 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 EDC3Q96F86 508 aaKnown RBP12.08□□□□□ -0.48
CPSF4-213ENST00000484112 FEZ1Q99689 392 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 HAUS7Q99871 368 aa12.08□□□□□ -0.48
CPSF4-213ENST00000484112 SENP6Q9GZR1 1112 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-213ENST00000484112 PLXNB2O15031 1838 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 ERC2O15083 957 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 GH2P01242 217 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 COL6A1P12109 1028 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 CNGA1P29973 690 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 MAP2K5Q13163 448 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 POTEEQ6S8J3 1075 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 SMC5Q8IY18 1101 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 EXOC6Q8TAG9 804 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 GTF3C2Q8WUA4 911 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-213ENST00000484112 APBA2Q99767 749 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 GINM1Q9NU53 330 aa12.07□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L15C9J2P7 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L13C9JLJ4 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L11C9JVI0 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L18D6R9N7 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L22D6RA61 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L17D6RBQ6 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L19D6RCP7 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L20D6RJB6 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 GLRX3O76003 335 aaKnown RBP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 CYP7A1P22680 504 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP5P45974 858 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 ATN1P54259 1190 aaPredicted RBP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 CCNA1P78396 465 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 USP17L24Q0WX57 530 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 RAB3GAP1Q15042 981 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 MFSD14CQ5VZR4 134 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 METTL16Q86W50 562 aaKnown RBP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 TICAM2Q86XR7 235 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 MIGA1Q8NAN2 632 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 FAM161BQ96MY7 647 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 LBHD1Q9BQE6 289 aaPredicted RBP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 PIH1D3Q9NQM4 214 aaKnown RBP12.06□□□□□ -0.48
CPSF4-213ENST00000484112 PAG1Q9NWQ8 432 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 FLRT1Q9NZU1 646 aa12.06□□□□□ -0.48
CPSF4-213ENST00000484112 RANBP2P49792 3224 aaKnown RBP12.05□□□□□ -0.48
CPSF4-213ENST00000484112 SMARCA5O60264 1052 aaPredicted RBP12.05□□□□□ -0.48
CPSF4-213ENST00000484112 CNMDO75829 334 aa12.05□□□□□ -0.48
CPSF4-213ENST00000484112 IDH1O75874 414 aaKnown RBP12.05□□□□□ -0.48
CPSF4-213ENST00000484112 ATP2B2Q01814 1243 aa12.05□□□□□ -0.48
CPSF4-213ENST00000484112 LRRFIP1Q32MZ4 808 aaKnown RBP12.05□□□□□ -0.48
CPSF4-213ENST00000484112 ZSCAN25Q6NSZ9 544 aa12.05□□□□□ -0.48
CPSF4-213ENST00000484112 RABGAP1Q9Y3P9 1069 aa12.05□□□□□ -0.48
CPSF4-213ENST00000484112 SIPA1L1O43166 1804 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 MYCNP04198 464 aaPredicted RBP12.04□□□□□ -0.48
CPSF4-213ENST00000484112 PTPREP23469 700 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 CATSPERGQ6ZRH7 1159 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 DNAJC2Q99543 621 aaKnown RBP12.04□□□□□ -0.48
CPSF4-213ENST00000484112 BOLA2Q9H3K6 86 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 PRKAG2Q9UGJ0 569 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 DDX20Q9UHI6 824 aaKnown RBP12.04□□□□□ -0.48
CPSF4-213ENST00000484112 IVNS1ABPQ9Y6Y0 642 aa12.04□□□□□ -0.48
CPSF4-213ENST00000484112 SLC15A5A6NIM6 579 aa12.03□□□□□ -0.48
CPSF4-213ENST00000484112 GOLIM4O00461 696 aa12.03□□□□□ -0.48
CPSF4-213ENST00000484112 MX1P20591 662 aa12.03□□□□□ -0.48
CPSF4-213ENST00000484112 CYP2C19P33261 490 aa12.03□□□□□ -0.48
CPSF4-213ENST00000484112 USP14P54578 494 aa12.03□□□□□ -0.48
CPSF4-213ENST00000484112 UBE3CQ15386 1083 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms