RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 HERC5Q9UII4 1024 aaKnown RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 RABGAP1Q9Y3P9 1069 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 UTYO14607 1347 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 GRXCR1A8MXD5 290 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 JAG1P78504 1218 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 RASGRF1Q13972 1273 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 PLS1Q14651 629 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 RAB3GAP1Q15042 981 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 LRRC41Q15345 812 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 MAPKAPK5Q8IW41 473 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 WDR63Q8IWG1 891 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 TGFBRAP1Q8WUH2 860 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 VTI1AQ96AJ9 217 aa9.5□□□□□ -0.89
USP54-213ENST00000481991 COL2A1P02458 1487 aaPredicted RBP9.5□□□□□ -0.89
USP54-213ENST00000481991 DOCK1Q14185 1865 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 MYH2Q9UKX2 1941 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 DCDC2CA8MYV0 355 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 BAG3O95817 575 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 PBX2P40425 430 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 RFX5P48382 616 aaPredicted RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 ALYREFQ86V81 257 aaKnown RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 FOXP4Q8IVH2 680 aaPredicted RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 USP44Q9H0E7 712 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 DHX36Q9H2U1 1008 aaKnown RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 RNF216Q9NWF9 866 aaPredicted RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 SLC5A4Q9NY91 659 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 MSRAQ9UJ68 235 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 PALD1Q9ULE6 856 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 PA2G4Q9UQ80 394 aaKnown RBP9.49□□□□□ -0.89
USP54-213ENST00000481991 EYSQ5T1H1 3165 aa9.49□□□□□ -0.89
USP54-213ENST00000481991 PRUNE2Q8WUY3 3088 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 PLXNB2O15031 1838 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 DOCK2Q92608 1830 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 SEPT4O43236 478 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 CNMDO75829 334 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 PGK1P00558 417 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 GH2P01242 217 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 CYBAP13498 195 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 ADORA2AP29274 412 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 IL15P40933 162 aaPredicted RBP9.48□□□□□ -0.89
USP54-213ENST00000481991 CATSPERGQ6ZRH7 1159 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 RNF180Q86T96 592 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 SLC44A5Q8NCS7 719 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 XAGE2Q96GT9 111 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 XPNPEP3Q9NQH7 507 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 AATFQ9NY61 560 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP54-213ENST00000481991 BTBD7Q9P203 1132 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 ZBTB21Q9ULJ3 1066 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 PTPRFP10586 1907 aa9.48□□□□□ -0.89
USP54-213ENST00000481991 PHIPQ8WWQ0 1821 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 NPM3O75607 178 aaKnown RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 CIAO1O76071 339 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 MAP4K4O95819 1239 aaPredicted RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 HLA-DOAP06340 250 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 UBTFL1P0CB47 393 aaPredicted RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 ACRP10323 421 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 RARBP10826 455 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 TFF2Q03403 129 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 MVPQ14764 893 aaKnown RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 CCDC184Q52MB2 194 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 FAM47AQ5JRC9 791 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 AKNAD1Q5T1N1 836 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 CCDC174Q6PII3 467 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 ATF7IPQ6VMQ6 1270 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 NCAPG2Q86XI2 1143 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 SPATA5Q8NB90 893 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 NSUN4Q96CB9 384 aaKnown RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP54-213ENST00000481991 LRFN3Q9BTN0 628 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 PBX4Q9BYU1 374 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 EPHX3Q9H6B9 360 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 SLC28A3Q9HAS3 691 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 AKAP2Q9Y2D5 859 aa9.47□□□□□ -0.89
USP54-213ENST00000481991 SPTBN5Q9NRC6 3674 aaKnown RBP9.47□□□□□ -0.89
USP54-213ENST00000481991 A0A1B0GUL7 405 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 KIAA0355O15063 1070 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 STRNO43815 780 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 HOXC6P09630 235 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 TFCP2Q12800 502 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 ADGRE1Q14246 886 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 GRB14Q14449 540 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 AAK1Q2M2I8 961 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 TMEM31Q5JXX7 168 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 NAA16Q6N069 864 aaPredicted RBP9.46□□□□□ -0.9
USP54-213ENST00000481991 PI16Q6UXB8 463 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 NKX2-4Q9H2Z4 354 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 RPAP3Q9H6T3 665 aaPredicted RBP9.46□□□□□ -0.9
USP54-213ENST00000481991 CABP5Q9NP86 173 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 HMG20BQ9P0W2 317 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 TTC28Q96AY4 2481 aa9.46□□□□□ -0.9
USP54-213ENST00000481991 LAMA2P24043 3122 aaKnown RBP9.46□□□□□ -0.9
USP54-213ENST00000481991 MYH13Q9UKX3 1938 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 FAM86C2PA6NEL3 165 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 COBLO75128 1261 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 TIMP1P01033 207 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 PLCG2P16885 1265 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 ERCC3P19447 782 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 KCNQ1P51787 676 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 USP14P54578 494 aa9.45□□□□□ -0.9
USP54-213ENST00000481991 FAAP100Q0VG06 881 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms