RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 CDCA5Q96FF9 252 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 INTS4Q96HW7 963 aaKnown RBP9.68□□□□□ -0.86
SYNE1-225ENST00000481502 AS3MTQ9HBK9 375 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 NMRK2Q9NPI5 230 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 CCDC69A6NI79 296 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 USP17L5A8MUK1 530 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 K7ELQ4 463 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 USP2O75604 605 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 TOMM70O94826 608 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 ITGBL1O95965 494 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 GNAQP50148 359 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 FSTL1Q12841 308 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 TOB2Q14106 344 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 CATIPQ7Z7H3 387 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 SCYL3Q8IZE3 742 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 SLC44A5Q8NCS7 719 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 SMC1BQ8NDV3 1235 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 RBM46Q8TBY0 533 aaKnown RBP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 LZTS2Q9BRK4 669 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 WDR18Q9BV38 432 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE1-225ENST00000481502 LY9Q9HBG7 655 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 ARHGEF10LQ9HCE6 1279 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 IL17RBQ9NRM6 502 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 ZBTB21Q9ULJ3 1066 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 SLC12A7Q9Y666 1083 aa9.67□□□□□ -0.86
SYNE1-225ENST00000481502 SIPA1L1O43166 1804 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 C19orf81C9J6K1 198 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 SMIM22K7EJ46 135 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 PFKFB2O60825 505 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 AKR1B1P15121 316 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 KIF5BP33176 963 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 USP14P54578 494 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 TROAPQ12815 778 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 FAM47AQ5JRC9 791 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 LDLRAD1Q5T700 205 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 CPLX2Q6PUV4 134 aaKnown RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 MIGA2Q7L4E1 593 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 FAM177A1Q8N128 213 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 GMCL1P1Q8NEA9 526 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 BRF1Q92994 677 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 CEP95Q96GE4 821 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 LLPHQ9BRT6 129 aaKnown RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 GLIS2Q9BZE0 524 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 KAT14Q9H8E8 782 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 INCENPQ9NQS7 918 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 PICK1Q9NRD5 415 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 RBM28Q9NW13 759 aaKnown RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 TMX2Q9Y320 296 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 CSADQ9Y600 493 aa9.66□□□□□ -0.86
SYNE1-225ENST00000481502 POLR2AP24928 1970 aaKnown RBP9.66□□□□□ -0.86
SYNE1-225ENST00000481502 GREB1LQ9C091 1923 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 ADM5C9JUS6 153 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 MPHOSPH10O00566 681 aaKnown RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 KIF3CO14782 793 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 ZBTB43O43298 467 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 PLA2G6O60733 806 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 CDKL5O76039 1030 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 GH2P01242 217 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 SNHG28P0DPA3 235 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 PDIA3P30101 505 aaKnown RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 GUCY1A2P33402 732 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 EVX2Q03828 476 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 ICA1Q05084 483 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 PPATQ06203 517 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 CUL4AQ13619 759 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 GPATCH4Q5T3I0 446 aaKnown RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 APOA5Q6Q788 366 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 NFXL1Q6ZNB6 911 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 C2orf69Q8N8R5 385 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 PNMA1Q8ND90 353 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 LPAR1Q92633 364 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 GMCL1Q96IK5 515 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 WRNIP1Q96S55 665 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 TMEM47Q9BQJ4 181 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 KIAA1683Q9H0B3 1180 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 SLKQ9H2G2 1235 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 RBM27Q9P2N5 1060 aaKnown RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 STX8Q9UNK0 236 aa9.65□□□□□ -0.86
SYNE1-225ENST00000481502 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-225ENST00000481502 PASKQ96RG2 1323 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 SSC5DA1L4H1 1573 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CXCL11O14625 94 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CPA1P15085 419 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 PTPRAP18433 802 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 YY1P25490 414 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 SEPT2Q15019 361 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 SLC4A8Q2Y0W8 1093 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 SH3D19Q5HYK7 790 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 MAP1SQ66K74 1059 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CHST3Q7LGC8 479 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 ERO1BQ86YB8 467 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 TEX2Q8IWB9 1127 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CDAN1Q8IWY9 1227 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF654Q8IZM8 581 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 STK11IPQ8N1F8 1099 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 FANCBQ8NB91 859 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CTCFLQ8NI51 663 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-225ENST00000481502 DCAF4Q8WV16 495 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms